Factsheet for VIT_02s0025g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0225g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	VIT_00s0225g00220.t01	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77672	Soybean	endoplasmic reticulum	86.63	89.45
KRH27813	Soybean	endoplasmic reticulum, nucleus	86.41	88.53
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	85.76	88.06
KRH29071	Soybean	cytosol, endoplasmic reticulum	78.37	87.39
PGSC0003DMT400031784	Potato	cytosol	84.67	87.23
KRH24097	Soybean	endoplasmic reticulum	84.89	86.97
AT4G23460.1	Thale cress	cytosol	83.15	85.67
GSMUA_AchrUn_...	Banana	cytosol	83.91	85.59
CDY13257	Canola	cytosol	83.37	85.32
Bra035228.1-P	Field mustard	cytosol	83.15	85.09
GSMUA_Achr1P24200_001	Banana	cytosol	83.37	85.03
Bra019302.1-P	Field mustard	cytosol	81.09	84.77
EER94839	Sorghum	cytosol	82.39	84.5
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	82.39	84.41
Os03t0355600-01	Rice	plasma membrane	81.85	84.32
AT4G11380.2	Thale cress	cytosol	83.7	84.06
TraesCS4B01G165000.1	Wheat	cytosol, golgi	81.96	83.96
TraesCS4D01G166700.1	Wheat	cytosol	81.96	83.96
CDX94190	Canola	cytosol	81.85	83.67
HORVU4Hr1G045980.10	Barley	cytosol	81.63	83.54
TraesCS4A01G166200.2	Wheat	cytosol	81.74	83.46
Zm00001d029196_P002	Maize	cytosol	77.28	83.35
Zm00001d030865_P001	Maize	cytosol	6.52	83.33
Zm00001d032260_P001	Maize	plastid	11.74	68.35
CDX86788	Canola	cytosol	83.37	66.41
VIT_00s0153g00080.t01	Wine grape	cytosol	6.41	40.69
Zm00001d018154_P001	Maize	extracellular	13.8	35.67
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	26.85	29.27
VIT_13s0019g01530.t01	Wine grape	cytosol	23.59	19.04

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100241708	wikigene:100241708	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2
Gene3D:3.30.310.10	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C
ProteinID:CBI34366	ProteinID:CBI34366.3	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like
InterPro:Coatomer/calthrin_app_sub_C	UniProt:D7TV41	EMBL:FN596251	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037
EntrezGene:LOC100241708	wikigene:LOC100241708	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PIRSF:PIRSF002291
PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	TIGR:TC59868	UniParc:UPI0001BE4457	ArrayExpress:VIT_02s0025g00100	EnsemblPlantsGene:VIT_02s0025g00100
EnsemblPlants:VIT_02s0025g00100.t01	unigene:Vvi.7916	RefSeq:XP_002279641	RefSeq:XP_002279641.1	SEG:seg	:

Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:D7TV41]

Coordinates

chr2:-:254134..263635

Molecular Weight (calculated)

102182.0 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.107

Length

920 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTASICVAKL YDINAELVED RGFLESLKDL ISDNNPMVVA NAVAALSEIQ ENSSRPIFEV
201: TSHTLSKLLT ALNECTEWGQ VFILDALSKY KAADAREAES IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QRRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ESFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDPSL LDELLANIAT LSSVYHKPPD SFVTRVKTTP QRSEEDDYPD
601: GSEAGYSESS AHAPDSGASP PTSSSSVPYA SPKHPATTQV SPPPAAPAPD LLGDLIGLDN AIVPVDQPVE PAGPPLPVLL PASTGQGLQI SAHLARKDGQ
701: IFYSMLFENN SQIPLDGFMI QFNKNSFGLA PAGPLQVPQL QPGTSARTLL PMVLFQNMAP GPPNSLLQVA VKNNQQPVWY FSDKISLLVF FSEDGKMERA
801: SFLEAWKSLP DSNEVSKEFP GITVNSLEGI LDRLAASKVF FIAKRKHANQ EVLYLSAQVP GGITFLIELT MVAGAPGVKC AIKTPSPEMA PLFFEAIETL
901: LREKDDSEVH RVQTRIHELL

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.