CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99414
KRH45615
KRH69617
KRH74545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	KRG99414	AT1G60780.1	23543752
AT4G23460.1	KRH45615	AT1G60780.1	23543752
AT4G23460.1	KRH69617	AT1G60780.1	23543752
AT4G23460.1	KRH74545	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24097	Soybean	endoplasmic reticulum	96.97	89.09
KRH77672	Soybean	endoplasmic reticulum	92.12	85.3
KRH27813	Soybean	endoplasmic reticulum, nucleus	91.88	84.41
Zm00001d030865_P001	Maize	cytosol	7.15	81.94
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	87.52	80.58
PGSC0003DMT400031784	Potato	cytosol	86.91	80.29
Bra035228.1-P	Field mustard	cytosol	86.3	79.2
CDY13257	Canola	cytosol	86.18	79.09
AT4G23460.1	Thale cress	cytosol	85.58	79.06
Bra019302.1-P	Field mustard	cytosol	84.12	78.86
VIT_02s0025g00100.t01	Wine grape	cytosol	87.39	78.37
CDX94190	Canola	cytosol	84.61	77.56
Os03t0355600-01	Rice	plasma membrane	83.76	77.38
GSMUA_AchrUn_...	Banana	cytosol	84.48	77.27
GSMUA_Achr1P24200_001	Banana	cytosol	84.24	77.05
AT4G11380.2	Thale cress	cytosol	85.45	76.97
TraesCS4B01G165000.1	Wheat	cytosol, golgi	83.27	76.5
TraesCS4D01G166700.1	Wheat	cytosol	83.15	76.39
EER94839	Sorghum	cytosol	83.03	76.37
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	83.03	76.28
TraesCS4A01G166200.2	Wheat	cytosol	83.15	76.14
HORVU4Hr1G045980.10	Barley	cytosol	82.91	76.08
Zm00001d029196_P002	Maize	cytosol	77.82	75.26
Zm00001d032260_P001	Maize	plastid	12.73	66.46
CDX86788	Canola	cytosol	86.55	61.82
Zm00001d018154_P001	Maize	extracellular	14.67	33.99
KRH52665	Soybean	plastid	27.52	26.86
KRH62012	Soybean	plastid	27.27	26.63
KRH73041	Soybean	cytosol, peroxisome, plastid	23.88	17.43
KRH15094	Soybean	cytosol, peroxisome, plastid	23.64	17.26

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	EMBL:ACUP02006778
InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Cnd1_C	InterPro:Coatomer/calthrin_app_sub_C	EnsemblPlantsGene:GLYMA_11G095500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	UniProt:I1LIM0	InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	EnsemblPlants:KRH29071
ProteinID:KRH29071	ProteinID:KRH29071.1	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PFAM:PF12717
PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI000295DCB1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr11:-:7242440..7249074

Molecular Weight (calculated)

92098.0 Da

IEP (calculated)

4.769

GRAVY (calculated)

-0.097

Length

825 amino acids

Sequence
(BLAST)

001: MSRNDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELAAL AEIQENSSRP IFELTSSTLS KLLTALNECT EWGQVFILDA
201: LSRYKAADAR EAENIVERVT PRLQHANCAV VLSAVKMILQ QMELITSTDV VRNLCKKMAP PLVTLLSAEP EIQYVALRNI NLIVQRRPTI LAHEIKVFFC
301: KYNDPIYVKM EKLEIMIKLA SDRNIDQVLL EFKEYATEVD VDFVRKAVRA IGRCAIKLER AAERCISVLL ELIKIKVNYV VQEAIIVIKD IFRRYPNTYE
401: SIIATLCENL DTLDEPEAKA SMIWIIGEYA ERIDNADELL ESFLESFPEE PAQVQLQLLT ATVKLFLKKP TEGPQQMIQA AKDVVLAEKP VITDDSNQLD
501: PSLLDELLVN IATLSSVYHK PPDAFVTRTY LSAQKTEDDD YPEGSETGYS ESPGNHANGP ASPPPTAPVP DLLGDLMGTD NSSIVPPDEP TTTTGPPLSI
601: VLPTSVGHGF QVSAQLTRQD GQIFYSMLFE NNTHVPLDGF MIQFNKNTFG LAAAGPLQVP QLQPGTSART LLPMVMFQNM SQGPPSSLLQ VAVKNNQQPV
701: WYFNDKFSFH VLFTEDGIME RSAFLETWRS LPDSNEVSKD FPAIVIDSVE ATLDRLAASN VFFIAKRKNA NQDVFYFSAK IPQGIPLLIE LTTVVGNPGA
801: KCAIKTPSPE MSAFFFEAIE TLLRS

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.