Factsheet for Zm00001d047464_P024

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT4G23460.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94839	Sorghum	cytosol	98.66	98.77
Zm00001d029196_P002	Maize	cytosol	93.32	98.24
Os03t0355600-01	Rice	plasma membrane	94.77	95.3
TraesCS4B01G165000.1	Wheat	cytosol, golgi	93.54	93.54
TraesCS4D01G166700.1	Wheat	cytosol	93.43	93.43
HORVU4Hr1G045980.10	Barley	cytosol	93.21	93.1
TraesCS4A01G166200.2	Wheat	cytosol	92.98	92.67
GSMUA_Achr1P24200_001	Banana	cytosol	87.08	86.7
GSMUA_AchrUn_...	Banana	cytosol	86.75	86.36
KRH77672	Soybean	endoplasmic reticulum	85.08	85.75
KRH27813	Soybean	endoplasmic reticulum, nucleus	84.63	84.63
PGSC0003DMT400031784	Potato	cytosol	83.96	84.43
Bra019302.1-P	Field mustard	cytosol	82.41	84.09
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	83.74	83.93
AT4G23460.1	Thale cress	cytosol	83.3	83.76
Zm00001d030865_P001	Maize	cytosol	6.68	83.33
KRH24097	Soybean	endoplasmic reticulum	83.3	83.3
KRH29071	Soybean	cytosol, endoplasmic reticulum	76.28	83.03
Bra035228.1-P	Field mustard	cytosol	83.07	82.98
VIT_02s0025g00100.t01	Wine grape	cytosol	84.41	82.39
AT4G11380.2	Thale cress	cytosol	83.41	81.77
Zm00001d032260_P001	Maize	plastid	12.03	68.35
Zm00001d018154_P001	Maize	extracellular	13.92	35.11
Zm00001d044164_P002	Maize	plastid	25.72	27.05
Zm00001d011411_P002	Maize	plastid	25.84	26.85
Zm00001d035093_P002	Maize	plastid	24.61	19.35

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:103639126	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10
InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4	ProteinID:AQL06586.1	ProteinID:AQL06588.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276
InterPro:IPR011989	InterPro:IPR012295	InterPro:IPR013037	UniProt:K7WDG3	PFAM:PF01602	PFAM:PF02883
PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	SMART:SM00809	SMART:SM01020
SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI000222149C	EnsemblPlantsGene:Zm00001d047464
EnsemblPlants:Zm00001d047464_P024	EnsemblPlants:Zm00001d047464_T024	SEG:seg	:	:	:

Description

Beta-adaptin-like protein C

Coordinates

chr9:+:130955271..130962136

Molecular Weight (calculated)

99494.9 Da

IEP (calculated)

4.689

GRAVY (calculated)

-0.077

Length

898 amino acids

Sequence
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQR CLKDDDPYVR KTAAICVAKL YDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ DSSVRPIFEI
201: TSHTLSKLLT ALNECTEWGQ VFILDSLSRY KAADAREAEN IVERVTPRLQ HANCAVVLSA VKIILLQMEL ITSTDVVRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ETFPEEPALV QLQLLTATVK LFLKKPTEGP
501: QQMIQAVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIS DDSNQLDSSL LDELLANIST LSSVYHKPPE SFVSRVKAAP RADDDEFADT
601: AETGYSESPS QGVDGASPSS SAGTSSNVPV KQPAAASPPG PVVMPDLLGD LMGMDNAIVP VDEPAAPSGP PLPVLLPSNT GQGLQISAQL TRRDGQIYYD
701: ISFENGTQGV LDGFMIQFNK NTFGLAAGEA LQVTPLQPGQ STRTLLQMNT FQNISPGAPN SLLQVAVKNN QQPVWYFNDK IPLHVFFGED GKMERASFLE
801: AWKSLPDDNE FTKEFPGSVI SSIDATVERL AASNVFFIAK RKNANMDVLY LSAKMPRGIP FLIEVTAAVG VPGVKCAVKT PNREMVPLFF EAMEALTK

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.