Factsheet for Zm00001d036168_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002906	Potato	mitochondrion	60.91	67.27
PGSC0003DMT400069426	Potato	cytosol	34.98	63.91
Solyc04g026380.2.1	Tomato	cytosol	60.08	62.13
Zm00001d052338_P001	Maize	cytosol	11.52	47.46
Zm00001d011676_P001	Maize	extracellular, plasma membrane	72.43	41.03
Zm00001d043726_P001	Maize	cytosol	72.02	40.79
EES01338	Sorghum	cytosol	72.02	40.79
Os01t0703600-01	Rice	plasma membrane	71.19	40.33
HORVU3Hr1G066020.1	Barley	cytosol	69.96	39.63
TraesCS3D01G255100.2	Wheat	cytosol	69.55	39.39
TraesCS3A01G254200.2	Wheat	cytosol	69.55	39.39
TraesCS3B01G286200.2	Wheat	cytosol	69.14	39.16
VIT_00s0225g00220.t01	Wine grape	cytosol	68.31	38.78
GSMUA_Achr7P17600_001	Banana	cytosol	67.9	38.55
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	66.26	37.62
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	65.43	37.15
CDY61312	Canola	cytosol	64.2	36.45
KRH69617	Soybean	cytosol	64.2	36.45
CDX97909	Canola	cytosol	63.79	36.22
KRH74545	Soybean	endoplasmic reticulum	63.79	36.22
CDY54239	Canola	cytosol	63.79	36.22
Solyc05g013340.2.1	Tomato	plastid	63.37	36.15
Bra031752.1-P	Field mustard	cytosol	62.96	36.08
Solyc06g071650.1.1	Tomato	cytosol, plastid	61.73	36.06
AT1G60780.1	Thale cress	cytosol	63.37	35.98
KRH45615	Soybean	cytosol	63.37	35.98
KRG99414	Soybean	cytosol	63.37	35.98
CDY63681	Canola	cytosol	63.37	35.98
CDY46183	Canola	cytosol	63.37	35.98
CDY19316	Canola	cytosol	63.37	35.98
Bra031481.1-P	Field mustard	cytosol	63.37	35.98
Bra019904.1-P	Field mustard	cytosol	63.37	35.98
CDY63680	Canola	cytosol	62.96	35.33
AT1G10730.1	Thale cress	cytosol	58.44	33.18
Zm00001d044264_P001	Maize	cytosol	18.11	14.72
Zm00001d021311_P001	Maize	plastid	13.17	13.79
Zm00001d049311_P001	Maize	cytosol	12.35	13.27
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	27.98	13.03
Zm00001d006386_P001	Maize	cytosol, plastid	13.17	10.96
Zm00001d054005_P006	Maize	cytosol	17.7	9.89
Zm00001d002305_P001	Maize	mitochondrion	16.87	9.58
Zm00001d002925_P002	Maize	plastid	21.81	3.77
Zm00001d032192_P001	Maize	extracellular, golgi	5.76	3.22
Solyc04g026360.2.1	Tomato	nucleus	2.47	2.64

Protein Annotations

Gene3D:2.60.40.1170	Gene3D:3.40.50.2000	MapMan:35.1	UniProt:A0A1D6LL31	InterPro:AP2_Mu_C_sf	ProteinID:AQK80397.1
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0005985	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016157
GO:GO:0016192	GO:GO:0016740	GO:GO:0030131	InterPro:IPR028565	InterPro:MHD	PFAM:PF00862
PFAM:PF00928	PRINTS:PR00314	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338
SUPFAM:SSF49447	InterPro:Sucrose_synth	UniParc:UPI0008459D9E	EnsemblPlantsGene:Zm00001d036168	EnsemblPlants:Zm00001d036168_P001	EnsemblPlants:Zm00001d036168_T001

Description

AP-1 complex subunit mu-2

Coordinates

chr6:-:75651514..75655252

Molecular Weight (calculated)

27697.0 Da

IEP (calculated)

10.187

GRAVY (calculated)

-0.224

Length

243 amino acids

Sequence
(BLAST)

001: MLRNKVWFSI CRSVPATKLM LSNFRHRRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLSTQVKPL IWVEAQIEKH SRSRIELMVK
101: ARSQFKERST ATNVEIEVHV PSDATNPNIR TSMGSAAYAP ERDAMVWKIK SFPGGKEYMC RAEFSLPSIT AEEGAPEKKA PIQVKFEIPY FTVSGIQVVY
201: ILGQVRAMDN EMLLRIKQYG LDMMPKILIL SVMANMVKGK CSG

Best Arabidopsis Sequence Match ( AT1G10730.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM

Arabidopsis Description

AP1M1AP-1 complex subunit mu-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.