Factsheet for Solyc04g026380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g026360.2.1
Solyc04g026380.2.1
Solyc05g013340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Solyc04g026360.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc04g026380.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc05g013340.2.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002906	Potato	mitochondrion	91.49	97.73
Zm00001d052338_P001	Maize	cytosol	20.85	83.05
Zm00001d036168_P001	Maize	mitochondrion	62.13	60.08
Solyc05g013340.2.1	Tomato	plastid	87.66	48.36
VIT_00s0225g00220.t01	Wine grape	cytosol	85.96	47.2
Bra031481.1-P	Field mustard	cytosol	85.53	46.96
CDY61312	Canola	cytosol	85.53	46.96
CDY63681	Canola	cytosol	85.53	46.96
KRH45615	Soybean	cytosol	85.53	46.96
KRG99414	Soybean	cytosol	85.53	46.96
CDX97909	Canola	cytosol	85.11	46.73
CDY46183	Canola	cytosol	85.11	46.73
CDY54239	Canola	cytosol	85.11	46.73
KRH69617	Soybean	cytosol	85.11	46.73
KRH74545	Soybean	endoplasmic reticulum	84.68	46.5
CDY19316	Canola	cytosol	84.68	46.5
AT1G60780.1	Thale cress	cytosol	84.68	46.5
Bra019904.1-P	Field mustard	cytosol	84.68	46.5
Bra031752.1-P	Field mustard	cytosol	83.83	46.46
GSMUA_Achr7P17600_001	Banana	cytosol	84.26	46.26
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	83.83	46.03
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	83.4	45.79
CDY63680	Canola	cytosol	83.83	45.5
Zm00001d011676_P001	Maize	extracellular, plasma membrane	82.98	45.45
TraesCS3D01G255100.2	Wheat	cytosol	82.98	45.45
TraesCS3B01G286200.2	Wheat	cytosol	82.98	45.45
TraesCS3A01G254200.2	Wheat	cytosol	82.98	45.45
HORVU3Hr1G066020.1	Barley	cytosol	82.98	45.45
Solyc06g071650.1.1	Tomato	cytosol, plastid	80.43	45.43
Os01t0703600-01	Rice	plasma membrane	82.55	45.22
EES01338	Sorghum	cytosol	82.55	45.22
Zm00001d043726_P001	Maize	cytosol	82.55	45.22
TraesCS1A01G365600.1	Wheat	golgi	81.7	44.76
TraesCS1B01G383200.1	Wheat	cytosol	81.7	44.76
HORVU1Hr1G079050.3	Barley	cytosol	81.7	44.76
Os05t0543100-01	Rice	plasma membrane	81.28	44.42
AT1G10730.1	Thale cress	cytosol	79.57	43.69
TraesCS1D01G371000.1	Wheat	cytosol	79.57	41.01
GSMUA_Achr8P31910_001	Banana	cytosol	27.66	40.37
Solyc06g061150.2.1	Tomato	nucleus	39.15	20.96
Solyc08g006960.2.1	Tomato	cytosol, extracellular	38.3	20.55
Solyc04g076230.2.1	Tomato	cytosol	30.21	15.71
Solyc01g100820.2.1	Tomato	cytosol	20.85	11.81
Solyc04g026360.2.1	Tomato	nucleus	2.98	3.08

Protein Annotations

Gene3D:2.60.40.1170	MapMan:35.1	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	UniProt:K4BR78
InterPro:MHD	PFAM:PF00928	PRINTS:PR00314	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	EnsemblPlantsGene:Solyc04g026380.2	EnsemblPlants:Solyc04g026380.2.1	UniParc:UPI0002765E44	:

Description

No Description!

Coordinates

chr4:-:16478202..16482468

Molecular Weight (calculated)

26707.3 Da

IEP (calculated)

9.120

GRAVY (calculated)

-0.323

Length

235 amino acids

Sequence
(BLAST)

001: MHKNCIGPNC LYCSGMPECK LGLNDRVLLE AQGRNAKGKA IDLDDIKFHQ CVRLARFEND RTISFIPPDG AFEVMTYRLS TQVKPLVWVE AQVERHSKSR
101: VEILVKARSQ FKERSTATNV QIELPVPTDA TNPDVRTSMG SSTYAPEKDA LIWKIKSFPG GKEYMLRAEF SLPSISAEEA VPERKSPIRV KFEIPYFTVS
201: GIQVRYLKII EKSGYQALPW VRYITMAGEY ELRLA

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.