Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G383200.1 | Wheat | cytosol | 92.76 | 98.6 |
| TraesCS1A01G365600.1 | Wheat | golgi | 92.76 | 98.6 |
| HORVU1Hr1G079050.3 | Barley | cytosol | 92.76 | 98.6 |
| Os05t0543100-01 | Rice | plasma membrane | 87.06 | 92.33 |
| TraesCS3D01G255100.2 | Wheat | cytosol | 85.96 | 91.38 |
| GSMUA_Achr7P17600_001 | Banana | cytosol | 84.21 | 89.72 |
| VIT_00s0225g00220.t01 | Wine grape | cytosol | 83.11 | 88.55 |
| GSMUA_Achr2P06510_001 | Banana | cytosol, endoplasmic reticulum | 83.11 | 88.55 |
| GSMUA_Achr1P25430_001 | Banana | cytosol, extracellular | 82.02 | 87.38 |
| Solyc05g013340.2.1 | Tomato | plastid | 81.14 | 86.85 |
| KRH74545 | Soybean | endoplasmic reticulum | 81.14 | 86.45 |
| KRH45615 | Soybean | cytosol | 80.92 | 86.22 |
| KRG99414 | Soybean | cytosol | 80.92 | 86.22 |
| CDY19316 | Canola | cytosol | 80.92 | 86.22 |
| CDX97909 | Canola | cytosol | 80.92 | 86.22 |
| KRH69617 | Soybean | cytosol | 80.7 | 85.98 |
| Bra019904.1-P | Field mustard | cytosol | 80.7 | 85.98 |
| Bra031752.1-P | Field mustard | cytosol | 79.39 | 85.38 |
| CDY61312 | Canola | cytosol | 80.04 | 85.28 |
| CDY54239 | Canola | cytosol | 80.04 | 85.28 |
| AT1G60780.1 | Thale cress | cytosol | 79.82 | 85.05 |
| Bra031481.1-P | Field mustard | cytosol | 78.95 | 84.11 |
| PGSC0003DMT400002906 | Potato | mitochondrion | 40.57 | 84.09 |
| CDY63681 | Canola | cytosol | 78.73 | 83.88 |
| CDY46183 | Canola | cytosol | 78.73 | 83.88 |
| PGSC0003DMT400069426 | Potato | cytosol | 24.12 | 82.71 |
| CDY63680 | Canola | cytosol | 77.85 | 81.99 |
| Solyc04g026360.2.1 | Tomato | nucleus | 40.35 | 81.06 |
| AT1G10730.1 | Thale cress | cytosol | 75.22 | 80.14 |
| Solyc04g026380.2.1 | Tomato | cytosol | 41.01 | 79.57 |
| Solyc06g071650.1.1 | Tomato | cytosol, plastid | 71.93 | 78.85 |
| TraesCS6D01G251100.1 | Wheat | extracellular | 36.84 | 38.36 |
| TraesCS2D01G172100.1 | Wheat | peroxisome | 29.17 | 29.49 |
| TraesCS2D01G171900.1 | Wheat | endoplasmic reticulum, plasma membrane | 1.97 | 25.0 |
| TraesCS1D01G240100.2 | Wheat | cytosol | 22.81 | 24.94 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.1.2.3 | InterPro:AP2_Mu_C_sf | InterPro:Clathrin_mu | InterPro:Clathrin_mu_CS | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030131 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf | InterPro:MHD |
| PFAM:PF00928 | PIRSF:PIRSF005992 | PRINTS:PR00314 | ScanProsite:PS00990 | PFscan:PS51072 | PANTHER:PTHR10529 |
| PANTHER:PTHR10529:SF338 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | EnsemblPlantsGene:TraesCS1D01G371000 | EnsemblPlants:TraesCS1D01G371000.1 | TIGR:cd09250 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:449454649..449457824
Molecular Weight (calculated)
51672.2 Da
IEP (calculated)
6.142
GRAVY (calculated)
-0.155
Length
456 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAVSALFL LDIKGRVLVW RDYRGDVTAL QAERFFTKLL DKEVSAPVLS SPLLSDLCSI ELRSELCPAS ASRGHQGDAE VHSPVVHDGA GVSYTFIQHN
101: NVFLLTAARQ NCNAASILLF LHRLVDVFKH YFEELEEESL RDNFVVVYEL LDEMMDFGYP QYTEATILSE FIKTDAYRME VTQRPPMAVT NAVSWRSEGI
201: RYKKNEVFLD VVESVNILVN SNGQIVRSDI IGALKMRTFL SGMPECKLGL NDRVLLEAQG RATKGKAIDL DDIKFHQFEN DRTISFVPPD GAFDLMTYRL
301: TTQVKPLIWV EAQVEKHSRS RIEIMVKARS QFKERSTGTN VEIEVPVPYD ATNPNIRTSM GSAAYAPERD AMVWKIKSFP GGKEYMCRAE FSLPSITSEE
401: ATPEKKAPIR VKFEIPYFTV SGIQVRYLKV IEKSGYQALP WVRYITMAGE YELRLI
101: NVFLLTAARQ NCNAASILLF LHRLVDVFKH YFEELEEESL RDNFVVVYEL LDEMMDFGYP QYTEATILSE FIKTDAYRME VTQRPPMAVT NAVSWRSEGI
201: RYKKNEVFLD VVESVNILVN SNGQIVRSDI IGALKMRTFL SGMPECKLGL NDRVLLEAQG RATKGKAIDL DDIKFHQFEN DRTISFVPPD GAFDLMTYRL
301: TTQVKPLIWV EAQVEKHSRS RIEIMVKARS QFKERSTGTN VEIEVPVPYD ATNPNIRTSM GSAAYAPERD AMVWKIKSFP GGKEYMCRAE FSLPSITSEE
401: ATPEKKAPIR VKFEIPYFTV SGIQVRYLKV IEKSGYQALP WVRYITMAGE YELRLI
001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM
Arabidopsis Description
AP1M1AP-1 complex subunit mu-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAC9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.