Factsheet for PGSC0003DMT400069426

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052338_P001	Maize	cytosol	38.35	86.44
PGSC0003DMT400002906	Potato	mitochondrion	82.71	50.0
GSMUA_Achr8P31910_001	Banana	cytosol	44.36	36.65
Zm00001d036168_P001	Maize	mitochondrion	63.91	34.98
Solyc06g071650.1.1	Tomato	cytosol, plastid	98.5	31.49
Zm00001d011676_P001	Maize	extracellular, plasma membrane	85.71	26.57
Os01t0703600-01	Rice	plasma membrane	85.71	26.57
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	84.96	26.4
GSMUA_Achr7P17600_001	Banana	cytosol	84.96	26.4
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	84.96	26.4
HORVU3Hr1G066020.1	Barley	cytosol	84.96	26.34
Zm00001d043726_P001	Maize	cytosol	84.96	26.34
EES01338	Sorghum	cytosol	84.96	26.34
TraesCS3A01G254200.2	Wheat	cytosol	84.21	26.11
TraesCS3B01G286200.2	Wheat	cytosol	84.21	26.11
TraesCS3D01G255100.2	Wheat	cytosol	84.21	26.11
Os05t0543100-01	Rice	plasma membrane	84.21	26.05
HORVU1Hr1G079050.3	Barley	cytosol	82.71	25.64
TraesCS1A01G365600.1	Wheat	golgi	82.71	25.64
TraesCS1B01G383200.1	Wheat	cytosol	82.71	25.64
TraesCS1D01G371000.1	Wheat	cytosol	82.71	24.12
PGSC0003DMT400052825	Potato	cytosol, extracellular	35.34	10.73
PGSC0003DMT400024188	Potato	cytosol	26.32	7.74
PGSC0003DMT400007122	Potato	cytosol	15.04	4.99

Protein Annotations

Gene3D:2.60.40.1170	MapMan:35.1	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	UniProt:M1CKF3	InterPro:MHD
PFAM:PF00928	EnsemblPlantsGene:PGSC0003DMG400026991	PGSC:PGSC0003DMG400026991	EnsemblPlants:PGSC0003DMT400069426	PRINTS:PR00314	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	UniParc:UPI000296D250	:	:

Description

Clathrin coat assembly protein ap-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026991]

Coordinates

chr6:-:52487418..52488318

Molecular Weight (calculated)

15311.6 Da

IEP (calculated)

9.888

GRAVY (calculated)

-0.331

Length

133 amino acids

Sequence
(BLAST)

001: MSVKARSQFK ERSTATNVEI ELPVPSDAMS PNIRTSMGYA TYAPERDAVV WKIKSFPGNK DYMLRAEFRL PSVISEDTPP DRKAPIRVKF EIPYFTVSGI
101: QVRYLKIIEK SGYQALPWVR YITMAGEYEL RLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.