Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- endoplasmic reticulum 3
- plastid 1
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P17600_001 | Banana | cytosol | 95.56 | 95.56 |
VIT_00s0225g00220.t01 | Wine grape | cytosol | 92.99 | 92.99 |
GSMUA_Achr1P25430_001 | Banana | cytosol, extracellular | 92.76 | 92.76 |
Zm00001d043726_P001 | Maize | cytosol | 92.76 | 92.54 |
EES01338 | Sorghum | cytosol | 92.76 | 92.54 |
Zm00001d011676_P001 | Maize | extracellular, plasma membrane | 92.52 | 92.31 |
Os01t0703600-01 | Rice | plasma membrane | 92.29 | 92.07 |
HORVU3Hr1G066020.1 | Barley | cytosol | 91.59 | 91.38 |
TraesCS3D01G255100.2 | Wheat | cytosol | 91.12 | 90.91 |
TraesCS3A01G254200.2 | Wheat | cytosol | 90.89 | 90.68 |
TraesCS3B01G286200.2 | Wheat | cytosol | 90.65 | 90.44 |
Os05t0543100-01 | Rice | plasma membrane | 90.42 | 90.0 |
Solyc05g013340.2.1 | Tomato | plastid | 89.25 | 89.67 |
HORVU1Hr1G079050.3 | Barley | cytosol | 89.72 | 89.51 |
TraesCS1B01G383200.1 | Wheat | cytosol | 89.72 | 89.51 |
TraesCS1A01G365600.1 | Wheat | golgi | 89.72 | 89.51 |
KRH45615 | Soybean | cytosol | 89.02 | 89.02 |
KRG99414 | Soybean | cytosol | 89.02 | 89.02 |
KRH69617 | Soybean | cytosol | 88.32 | 88.32 |
KRH74545 | Soybean | endoplasmic reticulum | 88.32 | 88.32 |
PGSC0003DMT400002906 | Potato | mitochondrion | 45.33 | 88.18 |
CDX97909 | Canola | cytosol | 88.08 | 88.08 |
CDY19316 | Canola | cytosol | 88.08 | 88.08 |
Bra031481.1-P | Field mustard | cytosol | 87.85 | 87.85 |
Bra019904.1-P | Field mustard | cytosol | 87.85 | 87.85 |
Bra031752.1-P | Field mustard | cytosol | 86.92 | 87.74 |
CDY54239 | Canola | cytosol | 87.62 | 87.62 |
AT1G60780.1 | Thale cress | cytosol | 87.62 | 87.62 |
CDY61312 | Canola | cytosol | 87.62 | 87.62 |
CDY63681 | Canola | cytosol | 87.62 | 87.62 |
CDY46183 | Canola | cytosol | 87.15 | 87.15 |
CDY63680 | Canola | cytosol | 86.92 | 85.91 |
PGSC0003DMT400069426 | Potato | cytosol | 26.4 | 84.96 |
AT1G10730.1 | Thale cress | cytosol | 83.64 | 83.64 |
Solyc04g026380.2.1 | Tomato | cytosol | 45.79 | 83.4 |
Solyc06g071650.1.1 | Tomato | cytosol, plastid | 80.84 | 83.17 |
TraesCS1D01G371000.1 | Wheat | cytosol | 88.55 | 83.11 |
Solyc04g026360.2.1 | Tomato | nucleus | 43.93 | 82.82 |
Zm00001d036168_P001 | Maize | mitochondrion | 37.15 | 65.43 |
GSMUA_Achr8P31910_001 | Banana | cytosol | 18.93 | 50.31 |
GSMUA_Achr4P28880_001 | Banana | cytosol | 39.72 | 38.81 |
GSMUA_Achr10P... | Banana | cytosol | 28.27 | 30.25 |
GSMUA_Achr6P10200_001 | Banana | cytosol | 29.21 | 29.83 |
GSMUA_Achr2P12100_001 | Banana | cytosol | 39.72 | 28.57 |
GSMUA_Achr5P21080_001 | Banana | cytosol | 25.0 | 25.72 |
Protein Annotations
Gene3D:2.60.40.1170 | MapMan:22.1.2.3 | Gene3D:3.30.450.60 | InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su | InterPro:Clathrin_mu |
InterPro:Clathrin_mu_CS | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030131 |
EnsemblPlantsGene:GSMUA_Achr2G06510_001 | EnsemblPlants:GSMUA_Achr2P06510_001 | EnsemblPlants:GSMUA_Achr2T06510_001 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf | UniProt:M0S5P2 |
InterPro:MHD | PFAM:PF00928 | PFAM:PF01217 | PIRSF:PIRSF005992 | PRINTS:PR00314 | ScanProsite:PS00990 |
ScanProsite:PS00991 | PFscan:PS51072 | PANTHER:PTHR10529 | PANTHER:PTHR10529:SF338 | SUPFAM:SSF49447 | SUPFAM:SSF64356 |
UniParc:UPI000295FFF9 | : | : | : | : | : |
Description
AP-1 complex subunit mu-1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G06510_001]
Coordinates
chr2:-:11280499..11284160
Molecular Weight (calculated)
49066.2 Da
IEP (calculated)
6.728
GRAVY (calculated)
-0.173
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAVSALFL LDIKGRVLIW RDYRGDVSAV QAERFFTKLI EKEGDHESHS PVVFDDGISY MFIQHNNVFL MTAARQNCNA VSILLFLHRV VDVFKHYFVE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE AKILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIRYKK NEVFLDVVES VNILVNSNGQ IIRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRV LLEAQGRTTK GKAIDLDDIK FHQCVRLARF ENDRTISFIP PDGTFDLMTY RLSTQVKPPI WVEAQVDRHS RSRIEMMVKA
301: RSQFKERSTA TSVEIELPVP SDATNPSIRT SMGSAAYAPE HDALVWKIKS FPGGKEYMCR AEFSLPSITA EDAIPERKAP IRVKFEIPYF TISGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLI
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE AKILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIRYKK NEVFLDVVES VNILVNSNGQ IIRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRV LLEAQGRTTK GKAIDLDDIK FHQCVRLARF ENDRTISFIP PDGTFDLMTY RLSTQVKPPI WVEAQVDRHS RSRIEMMVKA
301: RSQFKERSTA TSVEIELPVP SDATNPSIRT SMGSAAYAPE HDALVWKIKS FPGGKEYMCR AEFSLPSITA EDAIPERKAP IRVKFEIPYF TISGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLI
001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
Arabidopsis Description
AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.