Factsheet for Solyc05g013340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 5
plastid 1
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g026360.2.1
Solyc04g026380.2.1
Solyc05g013340.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Solyc04g026360.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc04g026380.2.1	AT1G60780.1	23543752
AT1G60780.1	Solyc05g013340.2.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0225g00220.t01	Wine grape	cytosol	93.19	92.76
AT1G60780.1	Thale cress	cytosol	91.31	90.89
KRH45615	Soybean	cytosol	91.31	90.89
CDY54239	Canola	cytosol	91.31	90.89
CDY61312	Canola	cytosol	91.31	90.89
KRG99414	Soybean	cytosol	91.31	90.89
Bra031752.1-P	Field mustard	cytosol	90.38	90.8
CDY19316	Canola	cytosol	91.08	90.65
CDX97909	Canola	cytosol	90.85	90.42
KRH69617	Soybean	cytosol	90.61	90.19
KRH74545	Soybean	endoplasmic reticulum	90.61	90.19
GSMUA_Achr7P17600_001	Banana	cytosol	90.61	90.19
Bra019904.1-P	Field mustard	cytosol	90.61	90.19
Bra031481.1-P	Field mustard	cytosol	90.61	90.19
CDY63681	Canola	cytosol	90.38	89.95
HORVU3Hr1G066020.1	Barley	cytosol	90.38	89.74
EES01338	Sorghum	cytosol	90.14	89.51
Zm00001d043726_P001	Maize	cytosol	90.14	89.51
CDY46183	Canola	cytosol	89.91	89.49
Zm00001d011676_P001	Maize	extracellular, plasma membrane	89.91	89.28
Os01t0703600-01	Rice	plasma membrane	89.91	89.28
TraesCS3D01G255100.2	Wheat	cytosol	89.91	89.28
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	89.67	89.25
TraesCS3A01G254200.2	Wheat	cytosol	89.67	89.04
TraesCS3B01G286200.2	Wheat	cytosol	89.67	89.04
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	88.73	88.32
Solyc04g026360.2.1	Tomato	nucleus	46.95	88.11
CDY63680	Canola	cytosol	89.44	87.99
Solyc04g026380.2.1	Tomato	cytosol	48.36	87.66
TraesCS1A01G365600.1	Wheat	golgi	88.03	87.41
TraesCS1B01G383200.1	Wheat	cytosol	88.03	87.41
HORVU1Hr1G079050.3	Barley	cytosol	88.03	87.41
Os05t0543100-01	Rice	plasma membrane	88.03	87.21
AT1G10730.1	Thale cress	cytosol	86.85	86.45
Zm00001d052338_P001	Maize	cytosol	11.5	83.05
Solyc06g071650.1.1	Tomato	cytosol, plastid	80.75	82.69
TraesCS1D01G371000.1	Wheat	cytosol	86.85	81.14
Zm00001d036168_P001	Maize	mitochondrion	36.15	63.37
GSMUA_Achr8P31910_001	Banana	cytosol	17.37	45.96
Solyc06g061150.2.1	Tomato	nucleus	40.14	38.95
Solyc08g006960.2.1	Tomato	cytosol, extracellular	39.91	38.81
Solyc04g076230.2.1	Tomato	cytosol	32.63	30.75
Solyc01g100820.2.1	Tomato	cytosol	24.18	24.82

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	UniProt:K4BY55	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217
PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc05g013340.2	EnsemblPlants:Solyc05g013340.2.1	UniParc:UPI0002765CCC

Description

No Description!

Coordinates

chr5:-:6428106..6437810

Molecular Weight (calculated)

48797.9 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.215

Length

426 amino acids

Sequence
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVTSV QAERFFTKLI EKEGDPLDPV AYDNGVTYMF IQHNNVYLMT ASRQNCNAAS LLLFLHRVVD VFKHYFEELE
101: EESLRDNFVV VYELLDEMMD FGYPQYTEAK ILSEFIKTDA YRMEVTQRPP MAVTNAVSWR SEGINYKKNE VFLDVVESVN ILVNSNGQIV RSDVVGALKM
201: RAYLSGMPEC KLGLNDRMLL EAQGRTTKGK AIDLDDIKFH QCVRLARFEN DRTISFIPPD GAFDLMTYRL GTQVKPLIWV EAQVERHSRS RMEIVVKARS
301: QFKERSTATN VEIELPVATD ATNPNVRTSM GSSTYAPEKD ALIWKIKSFP GGKEYMLRAE FTLPSITAEE SVPERKAPIR VKFEIPYFTV SGIQVRYLKI
401: IEKSGYQALP WVRYITMAGE YELRLV

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.