CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019904.1-P	Field mustard	cytosol	99.77	99.77
CDY19316	Canola	cytosol	99.3	99.3
CDY61312	Canola	cytosol	97.66	97.66
CDY54239	Canola	cytosol	97.66	97.66
CDY63681	Canola	cytosol	96.26	96.26
CDY46183	Canola	cytosol	96.26	96.26
CDY63680	Canola	cytosol	95.33	94.23
AT1G10730.1	Thale cress	cytosol	92.06	92.06
Solyc05g013340.2.1	Tomato	plastid	90.42	90.85
PGSC0003DMT400002906	Potato	mitochondrion	46.5	90.45
VIT_00s0225g00220.t01	Wine grape	cytosol	90.42	90.42
KRH45615	Soybean	cytosol	89.95	89.95
KRH74545	Soybean	endoplasmic reticulum	89.95	89.95
KRG99414	Soybean	cytosol	89.72	89.72
KRH69617	Soybean	cytosol	89.72	89.72
Zm00001d011676_P001	Maize	extracellular, plasma membrane	89.25	89.04
Zm00001d043726_P001	Maize	cytosol	89.02	88.81
EES01338	Sorghum	cytosol	89.02	88.81
Os01t0703600-01	Rice	plasma membrane	89.02	88.81
GSMUA_Achr7P17600_001	Banana	cytosol	88.32	88.32
HORVU3Hr1G066020.1	Barley	cytosol	88.32	88.11
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	88.08	88.08
TraesCS3D01G255100.2	Wheat	cytosol	87.62	87.41
TraesCS1A01G365600.1	Wheat	golgi	87.38	87.18
HORVU1Hr1G079050.3	Barley	cytosol	87.38	87.18
TraesCS3B01G286200.2	Wheat	cytosol	87.38	87.18
TraesCS3A01G254200.2	Wheat	cytosol	87.38	87.18
TraesCS1B01G383200.1	Wheat	cytosol	87.38	87.18
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	86.68	86.68
Os05t0543100-01	Rice	plasma membrane	86.22	85.81
Solyc04g026380.2.1	Tomato	cytosol	46.73	85.11
Solyc04g026360.2.1	Tomato	nucleus	43.69	82.38
Zm00001d052338_P001	Maize	cytosol	11.21	81.36
TraesCS1D01G371000.1	Wheat	cytosol	86.22	80.92
Zm00001d036168_P001	Maize	mitochondrion	36.22	63.79
GSMUA_Achr8P31910_001	Banana	cytosol	17.29	45.96
CDY67244	Canola	cytosol	25.0	40.38
CDX87692	Canola	cytosol	40.42	39.5
CDY63050	Canola	cytosol	40.42	39.5
CDY03204	Canola	cytosol	40.19	39.27
CDY35171	Canola	cytosol	40.19	39.27
CDX77680	Canola	cytosol	40.19	39.27
CDY03442	Canola	cytosol	31.07	29.36
CDY34290	Canola	cytosol	31.07	29.36
CDY24840	Canola	cytosol	31.54	29.16
CDY08937	Canola	cytosol	30.84	28.95
CDX92642	Canola	cytosol	31.31	28.88
CDY11020	Canola	cytosol	13.08	25.81
CDX95277	Canola	cytosol	26.17	25.75
CDY41703	Canola	cytosol	25.7	24.39

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	GO:A0A078EAV6	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su
EnsemblPlants:CDX97909	ProteinID:CDX97909	ProteinID:CDX97909.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00105251001	InterPro:IPR028565	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00991
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EE97B9

Description

BnaA06g06600D

Coordinates

chrLK031902:+:7934..11483

Molecular Weight (calculated)

49078.1 Da

IEP (calculated)

6.293

GRAVY (calculated)

-0.217

Length

428 amino acids

Sequence
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFSKLI EKEGDSESNE PVVYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV IDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGLQFKK NEVFLDVVES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIERHS RSRVEMLVKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSAAYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KVIEKSGYQA LPWVRYITMA GEYELRLM

Best Arabidopsis Sequence Match ( AT1G10730.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM

Arabidopsis Description

AP1M1AP-1 complex subunit mu-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.