CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86984
CDY00194
CDY05915
CDY08119

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	CDX86984	AT3G49250.1	21798944
AT1G56590.1	CDY00194	AT3G49250.1	21798944
AT1G56590.1	CDY05915	AT3G49250.1	21798944
AT1G56590.1	CDY08119	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027924.1-P	Field mustard	cytosol	93.1	98.54
AT1G56590.1	Thale cress	cytosol	88.51	92.77
CDY41703	Canola	cytosol	93.56	90.24
KRG96704	Soybean	cytosol	75.86	79.52
Solyc01g100820.2.1	Tomato	cytosol	75.17	78.8
VIT_14s0060g00840.t01	Wine grape	cytosol	74.94	78.55
KRH33789	Soybean	cytosol	74.71	78.31
PGSC0003DMT400007122	Potato	cytosol	71.49	77.56
KRH68423	Soybean	cytosol	76.78	76.43
GSMUA_Achr5P21080_001	Banana	cytosol	72.64	75.96
EES06180	Sorghum	cytosol	65.98	68.82
Os05t0383100-01	Rice	cytosol	65.29	68.11
TraesCS1D01G240100.2	Wheat	cytosol	64.37	67.15
HORVU1Hr1G057140.1	Barley	cytosol	64.37	67.15
TraesCS1A01G240000.1	Wheat	cytosol	64.14	66.91
TraesCS1B01G252100.2	Wheat	cytosol	64.14	66.91
Zm00001d044264_P001	Maize	cytosol	44.6	64.88
Zm00001d054005_P006	Maize	cytosol	64.83	64.83
Zm00001d006386_P001	Maize	cytosol, plastid	35.63	53.08
Zm00001d002305_P001	Maize	mitochondrion	44.37	45.09
Zm00001d049311_P001	Maize	cytosol	22.53	43.36
Zm00001d021311_P001	Maize	plastid	19.54	36.64
Zm00001d032192_P001	Maize	extracellular, golgi	26.9	26.9
CDY61312	Canola	cytosol	25.98	26.4
CDY54239	Canola	cytosol	25.75	26.17
CDY19316	Canola	cytosol	25.75	26.17
CDX97909	Canola	cytosol	25.75	26.17
CDY63681	Canola	cytosol	25.52	25.93
CDY46183	Canola	cytosol	25.52	25.93
CDY63680	Canola	cytosol	25.29	25.4
CDY34290	Canola	cytosol	24.83	23.84
CDY08937	Canola	cytosol	24.83	23.68
CDY03442	Canola	cytosol	24.37	23.4
CDY24840	Canola	cytosol	24.83	23.33
CDX92642	Canola	cytosol	24.14	22.63
CDY11020	Canola	cytosol	11.03	22.12
CDY67244	Canola	cytosol	12.87	21.13
CDY03204	Canola	cytosol	21.15	21.0
CDY63050	Canola	cytosol	21.15	21.0
CDY35171	Canola	cytosol	21.15	21.0
CDX87692	Canola	cytosol	20.92	20.78
CDX77680	Canola	cytosol	20.92	20.78

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	GO:A0A078E2A0	InterPro:AP2_Mu_C_sf	EnsemblPlants:CDX95277
ProteinID:CDX95277	ProteinID:CDX95277.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00100912001	InterPro:IPR028565	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EE91F1	:

Description

BnaC09g15930D

Coordinates

chrLK031887:-:1115511..1120152

Molecular Weight (calculated)

48949.2 Da

IEP (calculated)

5.688

GRAVY (calculated)

-0.075

Length

435 amino acids

Sequence
(BLAST)

001: MKAQSEELFV CFHREREREQ YRSSMLQCIF LLSDSGEVML EKQLTGHRVD RSICAWFWDQ ADSFKSFPVI ASPTHYLFQI VRDGITFLAC TQVEMPPLMA
101: IEFLCRVADV LSDYLGGLNE DLVKDNFIIV YELLDEMIDN GFPLTTEPNI LREMIAPPNL VSKMLSVVTG NASNVSDTLP SGTGSCVPWR PTDPKYSSNE
201: VYVDLVEEMD AIVNRDGELV KCEIYGQVQM SSQLTGFPDL TLSFANPSVL EDMRFHPCVR FRPWESHQIL SFVPPDGQFK LMSYRVKKLK NTPLYVKPQI
301: TSDSGACRVS VLVGIRSDPE KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPSDKTPC LSGTLALETG LERLHVYPTF KVGFKIMGIA
401: LSGLRIEKLD LKTIPPRLYK GFRAQTRAGE FDVRL

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.