Factsheet for Os05t0383100-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0235200-02
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Os04t0654700-02	AT1G71230.1	21798944
AT1G56590.1	Os01t0235200-02	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G057140.1	Barley	cytosol	88.49	88.49
EES06180	Sorghum	cytosol	88.25	88.25
TraesCS1D01G240100.2	Wheat	cytosol	88.01	88.01
TraesCS1B01G252100.2	Wheat	cytosol	88.01	88.01
TraesCS1A01G240000.1	Wheat	cytosol	88.01	88.01
Zm00001d044264_P001	Maize	cytosol	61.63	85.95
Zm00001d054005_P006	Maize	cytosol	86.81	83.22
GSMUA_Achr5P21080_001	Banana	cytosol	75.06	75.24
VIT_14s0060g00840.t01	Wine grape	cytosol	71.94	72.29
KRG96704	Soybean	cytosol	70.98	71.33
Solyc01g100820.2.1	Tomato	cytosol	70.74	71.08
KRH33789	Soybean	cytosol	70.26	70.6
PGSC0003DMT400007122	Potato	cytosol	67.63	70.32
Bra027924.1-P	Field mustard	cytosol	68.59	69.59
AT1G56590.1	Thale cress	cytosol	67.63	67.95
Zm00001d006386_P001	Maize	cytosol, plastid	47.48	67.81
KRH68423	Soybean	cytosol	70.74	67.51
CDX95277	Canola	cytosol	68.11	65.29
CDY41703	Canola	cytosol	68.35	63.19
Zm00001d002305_P001	Maize	mitochondrion	58.27	56.78
Zm00001d049311_P001	Maize	cytosol	29.74	54.87
Zm00001d021311_P001	Maize	plastid	23.74	42.67
Zm00001d032192_P001	Maize	extracellular, golgi	35.25	33.79
Os07t0620300-01	Rice	plasma membrane	27.34	25.28
Os01t0703600-01	Rice	plasma membrane	25.18	24.48
Os05t0543100-01	Rice	plasma membrane	24.94	24.19
Os02t0690700-01	Rice	plasma membrane	22.54	21.46

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	EntrezGene:4338648	ProteinID:AAT77324.1	InterPro:AP2_Mu_C_sf
ProteinID:BAF17324.1	ProteinID:BAS93786.1	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009605	GO:GO:0009606
GO:GO:0009628	GO:GO:0009630	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	EnsemblPlantsGene:Os05g0383100	EnsemblPlants:Os05t0383100-01	PFAM:PF00928
PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	UniProt:Q6AV18
SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI00003FE659	RefSeq:XP_015637612.1	:	:

Description

Clathrin adaptor, mu subunit domain containing protein. (Os05t0383100-01)

Coordinates

chr5:-:18508442..18512694

Molecular Weight (calculated)

46374.1 Da

IEP (calculated)

5.717

GRAVY (calculated)

-0.013

Length

417 amino acids

Sequence
(BLAST)

001: MLQCVFLLSD SGEVMVEKQM TAHRVDRGIC GWFWDYVLAH AAGDASKVLQ VVVSPTHYLF QVYRNGVTFL ACTQVEMPPL LAIEFLSRVA DVLTDYLGDL
101: NEDIIKDNFV LVYQILDEMM DNGFPLTTEP NILKEMIAPP NIVSKMLNVV TGKSSNLGNK LPDAAASFVP WRTTVVKDAS NEVYVNIVEE LDACVNREGA
201: LVKCEAYGKI QVNSSLPGVP ELTLSFSNPT IINDVRFHPC VRFRPWESNQ ILSFVPPDGQ FELMSYRVKK LKTTPIYVKP QLTSDSGNCR VNVMVGIKND
301: PGKTIDSITV QFRLPPLIAS ADLTANYGTV DILADQTCFW TIGQIPKDKA PSLSGNLRLE EGLTHLHTFP TFEVKFKIMG VALSGLQIDK LEVKNTPNAP
401: YKGFRAQTQA GRYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.