Factsheet for Os02t0690700-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 3
extracellular 3
plasma membrane 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 18260611
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07425	Sorghum	cytosol, extracellular	99.77	99.77
TraesCS6A01G263800.1	Wheat	extracellular	98.63	98.63
TraesCS6D01G251100.1	Wheat	extracellular	98.63	98.63
TraesCS6B01G290800.1	Wheat	golgi	98.4	98.4
GSMUA_Achr4P28880_001	Banana	cytosol	96.8	96.8
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	96.35	96.35
KRH77207	Soybean	cytosol, extracellular	94.98	94.98
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.52	94.52
CDY67244	Canola	cytosol	57.08	94.34
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.29	94.29
CDY35171	Canola	cytosol	94.06	94.06
CDY03204	Canola	cytosol	94.06	94.06
KRH58201	Soybean	mitochondrion	94.06	94.06
Bra025009.1-P	Field mustard	cytosol	94.06	94.06
Bra017537.1-P	Field mustard	cytosol	94.06	94.06
CDY63050	Canola	cytosol	93.84	93.84
CDX87692	Canola	cytosol	93.84	93.84
KRH04335	Soybean	endoplasmic reticulum	93.84	93.84
Bra022052.1-P	Field mustard	cytosol	93.61	93.61
Solyc06g061150.2.1	Tomato	nucleus	93.38	93.17
CDX77680	Canola	cytosol	93.15	93.15
KRH28283	Soybean	cytosol, golgi	92.69	92.69
HORVU6Hr1G066890.2	Barley	mitochondrion	97.72	90.68
AT5G46630.2	Thale cress	cytosol	89.73	89.12
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	95.21	79.89
GSMUA_Achr2P12100_001	Banana	cytosol	97.49	71.76
Os05t0543100-01	Rice	plasma membrane	38.58	39.3
Os01t0703600-01	Rice	plasma membrane	38.13	38.93
Os07t0620300-01	Rice	plasma membrane	28.77	27.94
Os05t0383100-01	Rice	cytosol	21.46	22.54

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	EntrezGene:4330379	EMBL:AK102342	InterPro:AP2_Mu_C_sf
ProteinID:BAD07683.1	ProteinID:BAF09707.1	ProteinID:BAS80379.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	ProteinID:EAZ24244.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	EnsemblPlantsGene:Os02g0690700	EnsemblPlants:Os02t0690700-01	PFAM:PF00928	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	UniProt:Q6ZGX8
SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0000236793	RefSeq:XP_015627628.1	SEG:seg	:

Description

Clathrin coat associated protein AP-50 domain containing protein. (Os02t0690700-01)

Coordinates

chr2:+:28355603..28360508

Molecular Weight (calculated)

49273.3 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.045

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFLY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP SDKPVPNATL QVTGAVGWRR EGLMYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE KEAQLKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEINV KVKSVFGAKM FALGVVVKVP VPKQTAKTSF QTTSGKAKYN ASIDSLVWKI RKFPGQTEAT MSAEVELIST MGEKKSWNRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITR AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.