Factsheet for PGSC0003DMT400052825

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g006960.2.1	Tomato	cytosol, extracellular	99.77	99.77
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	96.12	96.12
GSMUA_Achr4P28880_001	Banana	cytosol	95.43	95.43
KRH58201	Soybean	mitochondrion	95.21	95.21
KRH77207	Soybean	cytosol, extracellular	94.98	94.98
EES07425	Sorghum	cytosol, extracellular	94.52	94.52
Bra017537.1-P	Field mustard	cytosol	94.29	94.29
Os02t0690700-01	Rice	plasma membrane	94.29	94.29
KRH04335	Soybean	endoplasmic reticulum	94.29	94.29
CDY35171	Canola	cytosol	94.29	94.29
CDY03204	Canola	cytosol	94.29	94.29
Bra025009.1-P	Field mustard	cytosol	94.29	94.29
CDY63050	Canola	cytosol	94.06	94.06
CDX87692	Canola	cytosol	94.06	94.06
TraesCS6D01G251100.1	Wheat	extracellular	93.84	93.84
TraesCS6A01G263800.1	Wheat	extracellular	93.84	93.84
Bra022052.1-P	Field mustard	cytosol	93.84	93.84
KRH28283	Soybean	cytosol, golgi	93.61	93.61
TraesCS6B01G290800.1	Wheat	golgi	93.61	93.61
CDX77680	Canola	cytosol	93.38	93.38
CDY67244	Canola	cytosol	56.16	92.83
AT5G46630.2	Thale cress	cytosol	89.95	89.34
HORVU6Hr1G066890.2	Barley	mitochondrion	92.92	86.23
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	90.18	75.67
GSMUA_Achr2P12100_001	Banana	cytosol	96.35	70.92
PGSC0003DMT400002906	Potato	mitochondrion	19.41	38.64
PGSC0003DMT400069426	Potato	cytosol	10.73	35.34
PGSC0003DMT400024188	Potato	cytosol	28.31	27.43
PGSC0003DMT400007122	Potato	cytosol	20.55	22.44

Protein Annotations

EntrezGene:102600994	Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131
InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M1BU14	InterPro:MHD	PFAM:PF00928	EnsemblPlantsGene:PGSC0003DMG400020502
PGSC:PGSC0003DMG400020502	EnsemblPlants:PGSC0003DMT400052825	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0002954F77	RefSeq:XP_006362503.1
SEG:seg	:	:	:	:	:

Description

AP47/50p [Source:PGSC_GENE;Acc:PGSC0003DMG400020502]

Coordinates

chr8:+:1278048..1286091

Molecular Weight (calculated)

49322.4 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.008

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QSKELGTCPV RQIGGCSFLY MRISNVYIVI VVSSNANVAC AFKFVVEAVT LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSSFSSKH VDKPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKVLMK CFLTGMPDLK LGLNDKIGLE KESQLKSRPT KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVIKIP VPKQTAKTNF QVTSGRAKYN AAIDCLVWKI RKFPGQTEST LSAEVELIST ITEKKSLTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.