CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 3
plasma membrane 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0690700-01	Rice	plasma membrane	99.77	99.77
TraesCS6D01G251100.1	Wheat	extracellular	98.86	98.86
TraesCS6A01G263800.1	Wheat	extracellular	98.86	98.86
TraesCS6B01G290800.1	Wheat	golgi	98.63	98.63
GSMUA_Achr4P28880_001	Banana	cytosol	96.8	96.8
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	96.58	96.58
KRH77207	Soybean	cytosol, extracellular	95.21	95.21
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.75	94.75
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.52	94.52
CDY67244	Canola	cytosol	57.08	94.34
KRH58201	Soybean	mitochondrion	94.29	94.29
Bra017537.1-P	Field mustard	cytosol	94.06	94.06
KRH04335	Soybean	endoplasmic reticulum	94.06	94.06
CDY35171	Canola	cytosol	94.06	94.06
CDY03204	Canola	cytosol	94.06	94.06
Bra025009.1-P	Field mustard	cytosol	94.06	94.06
CDY63050	Canola	cytosol	93.84	93.84
CDX87692	Canola	cytosol	93.84	93.84
Bra022052.1-P	Field mustard	cytosol	93.61	93.61
Solyc06g061150.2.1	Tomato	nucleus	93.61	93.39
CDX77680	Canola	cytosol	93.15	93.15
KRH28283	Soybean	cytosol, golgi	92.92	92.92
HORVU6Hr1G066890.2	Barley	mitochondrion	97.95	90.89
AT5G46630.2	Thale cress	cytosol	89.73	89.12
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	95.43	80.08
GSMUA_Achr2P12100_001	Banana	cytosol	97.72	71.93
EES01338	Sorghum	cytosol	38.13	38.93
EER97557	Sorghum	cytosol, peroxisome, plastid	29.0	28.22
EES06180	Sorghum	cytosol	21.0	22.06

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	EntrezGene:8073187	InterPro:AP2_Mu_C_sf	UniProt:C5Y0S2
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlants:EES07425	ProteinID:EES07425	ProteinID:EES07425.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886	GO:GO:0006810
GO:GO:0006886	GO:GO:0006897	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	EnsemblPlantsGene:SORBI_3004G275700
SUPFAM:SSF49447	SUPFAM:SSF64356	unigene:Sbi.2021	UniParc:UPI0001A8622C	RefSeq:XP_002454449.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:61903809..61910963

Molecular Weight (calculated)

49241.3 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.040

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFLY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP SDKPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE KEAQLKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEINV KVKSVFGAKM FALGVVVKVP VPKQTAKTSF QTTSGKAKYN ASIDSLVWKI RKFPGQTEAT MSAEVELIST MGEKKSWNRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITR AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.