CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1
plastid 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287
KXG31464

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	KXG27287	AT1G71230.1	21798944
AT1G56590.1	KXG31464	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044264_P001	Maize	cytosol	66.91	93.31
Zm00001d054005_P006	Maize	cytosol	94.24	90.34
Os05t0383100-01	Rice	cytosol	88.25	88.25
TraesCS1D01G240100.2	Wheat	cytosol	87.77	87.77
TraesCS1B01G252100.2	Wheat	cytosol	87.77	87.77
HORVU1Hr1G057140.1	Barley	cytosol	87.77	87.77
TraesCS1A01G240000.1	Wheat	cytosol	87.77	87.77
GSMUA_Achr5P21080_001	Banana	cytosol	75.06	75.24
VIT_14s0060g00840.t01	Wine grape	cytosol	72.18	72.53
KRG96704	Soybean	cytosol	71.22	71.57
Solyc01g100820.2.1	Tomato	cytosol	70.98	71.33
Zm00001d006386_P001	Maize	cytosol, plastid	49.88	71.23
KRH33789	Soybean	cytosol	70.74	71.08
Bra027924.1-P	Field mustard	cytosol	70.02	71.05
PGSC0003DMT400007122	Potato	cytosol	67.63	70.32
AT1G56590.1	Thale cress	cytosol	69.54	69.88
KRH68423	Soybean	cytosol	70.98	67.73
CDX95277	Canola	cytosol	68.82	65.98
CDY41703	Canola	cytosol	69.3	64.08
Zm00001d002305_P001	Maize	mitochondrion	62.59	60.98
Zm00001d049311_P001	Maize	cytosol	30.94	57.08
Zm00001d021311_P001	Maize	plastid	25.18	45.26
Zm00001d032192_P001	Maize	extracellular, golgi	38.37	36.78
EES01338	Sorghum	cytosol	25.42	24.71
EER97557	Sorghum	cytosol, peroxisome, plastid	26.38	24.44
EES07425	Sorghum	cytosol, extracellular	22.06	21.0

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	EntrezGene:8068248	InterPro:AP2_Mu_C_sf	UniProt:C5XSZ4
InterPro:Clathrin_mu	EnsemblPlants:EES06180	ProteinID:EES06180	ProteinID:EES06180.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009605
GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992
PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	EnsemblPlantsGene:SORBI_3004G017300	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI0001A85F07	RefSeq:XP_002453204.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1361183..1365863

Molecular Weight (calculated)

46132.0 Da

IEP (calculated)

5.479

GRAVY (calculated)

0.036

Length

417 amino acids

Sequence
(BLAST)

001: MLQCIFLLSD SGEVMVEKQM AAHRVDRAIC AWFWDYVAAH AAGDPSKVLQ VVVSPTHYLF QIYRDGVTFL ACTQVEMAPL MAVEFLSRVA DVLTDYLGDL
101: NEDIIKDNFV IVYQILDEMM DNGFPLTTEP NILKEMIAPP NIVNKMLNVV TGKSSTLGSK LPDAAASFVP WRSTIVKDAS NEVYVNIVEE LDACVNREGG
201: LVKCEAYGEV QVNCSLPGVP ELTMSFANPT IINDVTFHPC VRFRPWESSQ VLSFVPPDGQ FKLMSYRVKK LKKTPIYVKP QLTSDSGNCR VSVMVGIRND
301: PGKPIDSITV QFQLPPLIVS ADLTANYGTV DILADKTCLW TIGQIPKDKA PALSGNLRLE EGLTQLHTLP TFQVKFKIMG VALSGLQIDK LDVKNTPNAP
401: YKGFRAQTQA GKYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.