CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH53504
KRH61926
KRH64437

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	KRH52586	AT1G71230.1	21798944
AT1G56590.1	KRH61926	AT1G71230.1	21798944
AT1G56590.1	KRH53504	AT3G49250.1	21798944
AT1G56590.1	KRH64437	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68423	Soybean	cytosol	96.87	91.99
KRH33789	Soybean	cytosol	86.75	86.75
VIT_14s0060g00840.t01	Wine grape	cytosol	83.61	83.61
Solyc01g100820.2.1	Tomato	cytosol	82.89	82.89
PGSC0003DMT400007122	Potato	cytosol	79.76	82.54
Bra027924.1-P	Field mustard	cytosol	79.28	80.05
AT1G56590.1	Thale cress	cytosol	79.52	79.52
GSMUA_Achr5P21080_001	Banana	cytosol	79.04	78.85
CDX95277	Canola	cytosol	79.52	75.86
CDY41703	Canola	cytosol	77.83	71.62
EES06180	Sorghum	cytosol	71.57	71.22
TraesCS1D01G240100.2	Wheat	cytosol	71.33	70.98
TraesCS1B01G252100.2	Wheat	cytosol	71.33	70.98
Os05t0383100-01	Rice	cytosol	71.33	70.98
HORVU1Hr1G057140.1	Barley	cytosol	71.08	70.74
TraesCS1A01G240000.1	Wheat	cytosol	71.08	70.74
Zm00001d044264_P001	Maize	cytosol	50.36	69.9
Zm00001d054005_P006	Maize	cytosol	71.57	68.28
Zm00001d006386_P001	Maize	cytosol, plastid	39.04	55.48
Zm00001d002305_P001	Maize	mitochondrion	48.19	46.73
Zm00001d049311_P001	Maize	cytosol	25.06	46.02
Zm00001d021311_P001	Maize	plastid	21.45	38.36
Zm00001d032192_P001	Maize	extracellular, golgi	28.67	27.36
KRG99414	Soybean	cytosol	25.3	24.53
KRH45615	Soybean	cytosol	25.3	24.53
KRH16840	Soybean	cytosol	26.51	24.34
KRH74545	Soybean	endoplasmic reticulum	25.06	24.3
KRH69617	Soybean	cytosol	25.06	24.3
KRH61131	Soybean	cytosol, nucleus	25.54	23.93
KRH51806	Soybean	cytosol	21.69	23.38
KRH72454	Soybean	cytosol	22.41	23.08
KRH28283	Soybean	cytosol, golgi	23.13	21.92
KRH77207	Soybean	cytosol, extracellular	22.65	21.46
KRH58201	Soybean	mitochondrion	22.41	21.23
KRH04335	Soybean	endoplasmic reticulum	22.41	21.23

Protein Annotations

EntrezGene:100799191	Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	EMBL:ACUP02012162	InterPro:AP2_Mu_C_sf
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlantsGene:GLYMA_19G227500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	UniProt:I1NBQ2	InterPro:IPR028565	EnsemblPlants:KRG96704	ProteinID:KRG96704
ProteinID:KRG96704.1	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI000233E608	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:47891020..47893754

Molecular Weight (calculated)

46298.0 Da

IEP (calculated)

4.898

GRAVY (calculated)

0.045

Length

415 amino acids

Sequence
(BLAST)

001: MLQCIFLLSD SGEVMLEKQL SGHRVDRSIC AWFWDQAISQ PDSFKQQPVI ASPTHYLFQV FREGITFLAC TQVEMPPLMA IEFLCRVADV LNDYLGGLNE
101: DLIKDNFVIV YELLDEMIDN GFPLTTEPNI LQEMIAPPNI VSKVLSVVTG SSSNVSDTLP VATASLVPWR TADTKYANNE VYVDLVEEMD ATINRDGVLV
201: KCEINGEVQV NSHITGLPDL TLSFANPSIL DDVRFHPCVR YQPWESNQIL SFVPPDGQFK LMSYRIRKLK NTPIYVKPQL TSDGGACRVS ILVGIRNDPG
301: KTIDNVTLQF QLPSCILSAD LTSNYGIVNI LANKTCSWSI GRIPKDKAPS MSGTLVLETG LDRLHVFPTF QVGFRIMGVA LSGLQIDKLD LKTVPYRFYK
401: GFRALTRAGE FEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.