CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 4
extracellular 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	cytosol, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28283	Soybean	cytosol, golgi	96.8	96.8
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	96.58	96.58
KRH58201	Soybean	mitochondrion	96.58	96.58
KRH04335	Soybean	endoplasmic reticulum	95.89	95.89
GSMUA_Achr4P28880_001	Banana	cytosol	95.89	95.89
Solyc08g006960.2.1	Tomato	cytosol, extracellular	95.21	95.21
EES07425	Sorghum	cytosol, extracellular	95.21	95.21
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.98	94.98
Os02t0690700-01	Rice	plasma membrane	94.98	94.98
Bra017537.1-P	Field mustard	cytosol	94.52	94.52
CDY35171	Canola	cytosol	94.52	94.52
CDY03204	Canola	cytosol	94.52	94.52
Bra025009.1-P	Field mustard	cytosol	94.52	94.52
CDY63050	Canola	cytosol	94.29	94.29
TraesCS6D01G251100.1	Wheat	extracellular	94.29	94.29
TraesCS6A01G263800.1	Wheat	extracellular	94.29	94.29
CDX87692	Canola	cytosol	94.29	94.29
TraesCS6B01G290800.1	Wheat	golgi	94.06	94.06
Bra022052.1-P	Field mustard	cytosol	94.06	94.06
CDY67244	Canola	cytosol	56.85	93.96
CDX77680	Canola	cytosol	93.61	93.61
Solyc06g061150.2.1	Tomato	nucleus	92.92	92.71
AT5G46630.2	Thale cress	cytosol	90.41	89.8
HORVU6Hr1G066890.2	Barley	mitochondrion	93.38	86.65
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	90.87	76.25
GSMUA_Achr2P12100_001	Banana	cytosol	96.8	71.26
KRH74545	Soybean	endoplasmic reticulum	40.41	41.36
KRH69617	Soybean	cytosol	40.18	41.12
KRH45615	Soybean	cytosol	39.73	40.65
KRG99414	Soybean	cytosol	39.73	40.65
KRH16840	Soybean	cytosol	29.45	28.54
KRH72454	Soybean	cytosol	26.03	28.29
KRH61131	Soybean	cytosol, nucleus	27.4	27.09
KRH51806	Soybean	cytosol	23.52	26.75
KRH33789	Soybean	cytosol	21.69	22.89
KRG96704	Soybean	cytosol	21.46	22.65
KRH68423	Soybean	cytosol	21.23	21.28

Protein Annotations

EntrezGene:100819211	Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	EMBL:ACUP02000663	InterPro:AP2_Mu_C_sf
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlantsGene:GLYMA_01G199000	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	UniProt:I1J9J7	InterPro:IPR028565	EnsemblPlants:KRH77207	ProteinID:KRH77207
ProteinID:KRH77207.1	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI00023BE290	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:53295104..53301276

Molecular Weight (calculated)

49262.3 Da

IEP (calculated)

9.644

GRAVY (calculated)

-0.019

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRTHIM QTKELGTCPV RQIGGCSFFY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP SDRPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGVVLR
201: SDVTGKILMK CFLSGMPDLK LGLNDKIGLE KESQLKSRPT KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFKVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKHTAKTSF TVTSGRAKYN ASIDCLVWKI RKFPGQTEPT LSAEVELIST MTEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSCEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.