CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025009.1-P	Field mustard	cytosol	99.77	99.77
CDX87692	Canola	cytosol	99.09	99.09
CDX77680	Canola	cytosol	98.86	98.86
CDY03204	Canola	cytosol	98.86	98.86
CDY35171	Canola	cytosol	98.86	98.86
CDY67244	Canola	cytosol	59.36	98.11
GSMUA_Achr4P28880_001	Banana	cytosol	94.75	94.75
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	94.52	94.52
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.29	94.29
KRH77207	Soybean	cytosol, extracellular	94.29	94.29
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.06	94.06
AT5G46630.2	Thale cress	cytosol	94.52	93.88
EES07425	Sorghum	cytosol, extracellular	93.84	93.84
KRH58201	Soybean	mitochondrion	93.84	93.84
Os02t0690700-01	Rice	plasma membrane	93.84	93.84
KRH04335	Soybean	endoplasmic reticulum	93.61	93.61
KRH28283	Soybean	cytosol, golgi	93.15	93.15
TraesCS6A01G263800.1	Wheat	extracellular	92.69	92.69
TraesCS6D01G251100.1	Wheat	extracellular	92.69	92.69
Solyc06g061150.2.1	Tomato	nucleus	92.69	92.48
TraesCS6B01G290800.1	Wheat	golgi	92.47	92.47
HORVU6Hr1G066890.2	Barley	mitochondrion	91.78	85.17
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	89.27	74.9
GSMUA_Achr2P12100_001	Banana	cytosol	95.21	70.08
CDY19316	Canola	cytosol	39.73	40.65
CDY54239	Canola	cytosol	39.5	40.42
CDX97909	Canola	cytosol	39.5	40.42
CDY61312	Canola	cytosol	39.27	40.19
CDY63681	Canola	cytosol	38.58	39.49
CDY46183	Canola	cytosol	38.36	39.25
CDY63680	Canola	cytosol	38.13	38.57
CDY34290	Canola	cytosol	29.22	28.26
CDY11020	Canola	cytosol	13.93	28.11
CDY03442	Canola	cytosol	28.77	27.81
CDY24840	Canola	cytosol	28.77	27.21
CDX92642	Canola	cytosol	27.63	26.08
CDY08937	Canola	cytosol	26.48	25.44
CDX95277	Canola	cytosol	21.0	21.15
CDY41703	Canola	cytosol	21.23	20.62

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	GO:A0A078JBF3	UniProt:A0A078JBF3	InterPro:AP2_Mu_C_sf
EnsemblPlants:CDY63050	ProteinID:CDY63050	ProteinID:CDY63050.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00037881001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EE3B43

Description

BnaA06g40410DBnaA06g40410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JBF3]

Coordinates

chrLK034238:+:11356..14502

Molecular Weight (calculated)

49355.3 Da

IEP (calculated)

9.536

GRAVY (calculated)

-0.085

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSTNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLSYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTINE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.