Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34290 | Canola | cytosol | 99.12 | 99.12 |
| Bra013813.1-P | Field mustard | cytosol | 93.38 | 94.84 |
| CDY24840 | Canola | cytosol | 96.25 | 94.17 |
| AT4G24550.2 | Thale cress | cytosol | 93.38 | 93.79 |
| CDY08937 | Canola | cytosol | 89.85 | 89.25 |
| CDX92642 | Canola | cytosol | 90.95 | 88.79 |
| CDY11020 | Canola | cytosol | 39.29 | 82.03 |
| PGSC0003DMT400024188 | Potato | cytosol | 81.46 | 81.64 |
| KRH61131 | Soybean | cytosol, nucleus | 79.03 | 80.81 |
| KRH16840 | Soybean | cytosol | 79.69 | 79.87 |
| Solyc04g076230.2.1 | Tomato | cytosol | 79.47 | 79.65 |
| KRH72454 | Soybean | cytosol | 70.64 | 79.4 |
| Os07t0620300-01 | Rice | plasma membrane | 78.37 | 78.71 |
| KRH51806 | Soybean | cytosol | 66.0 | 77.66 |
| TraesCS2B01G191200.1 | Wheat | golgi | 77.26 | 77.61 |
| EER97557 | Sorghum | cytosol, peroxisome, plastid | 77.04 | 77.56 |
| GSMUA_Achr10P... | Banana | cytosol | 66.45 | 75.25 |
| TraesCS2D01G172100.1 | Wheat | peroxisome | 74.17 | 74.5 |
| GSMUA_Achr6P10200_001 | Banana | cytosol | 68.21 | 73.75 |
| VIT_18s0001g13000.t01 | Wine grape | cytosol | 75.72 | 69.01 |
| HORVU2Hr1G030220.1 | Barley | cytosol, mitochondrion, peroxisome, plastid | 77.26 | 68.9 |
| CDY54239 | Canola | cytosol | 29.58 | 31.31 |
| CDY61312 | Canola | cytosol | 29.58 | 31.31 |
| CDY63681 | Canola | cytosol | 29.58 | 31.31 |
| CDX97909 | Canola | cytosol | 29.36 | 31.07 |
| CDY19316 | Canola | cytosol | 29.36 | 31.07 |
| CDY46183 | Canola | cytosol | 29.36 | 31.07 |
| CDY63680 | Canola | cytosol | 28.92 | 30.25 |
| CDY67244 | Canola | cytosol | 17.44 | 29.81 |
| CDX87692 | Canola | cytosol | 28.04 | 29.0 |
| CDY63050 | Canola | cytosol | 27.81 | 28.77 |
| CDX77680 | Canola | cytosol | 27.81 | 28.77 |
| CDY35171 | Canola | cytosol | 27.59 | 28.54 |
| CDY03204 | Canola | cytosol | 27.59 | 28.54 |
| CDX95277 | Canola | cytosol | 23.4 | 24.37 |
| CDY41703 | Canola | cytosol | 23.18 | 23.28 |
| Zm00001d002925_P002 | Maize | plastid | 64.02 | 20.66 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.5.2.2.3 | Gene3D:3.30.450.60 | GO:A0A078EQU4 | InterPro:AP2_Mu_C_sf | InterPro:AP_mu_sigma_su |
| EnsemblPlants:CDY03442 | ProteinID:CDY03442 | ProteinID:CDY03442.1 | InterPro:Clathrin_mu | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016192 | GO:GO:0030131 | EnsemblPlantsGene:GSBRNA2T00116095001 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf | InterPro:MHD |
| PFAM:PF00928 | PFAM:PF01217 | PIRSF:PIRSF005992 | PRINTS:PR00314 | PFscan:PS51072 | PANTHER:PTHR10529 |
| PANTHER:PTHR10529:SF270 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI0004EE20F3 | : | : |
Description
BnaC01g16400D
Coordinates
chrLK031943:-:483665..486961
Molecular Weight (calculated)
51006.1 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.161
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDANAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PIVIAPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPS GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRIAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NFTSRASFGL EPGAAGQKSD FKETNKMLEW SLKKASIVGG AEHTLRAKLT FSQEFHGNIT
401: KEAGPVSMTF TIPMYNVSKL QVKYLQIAKK SSSYNPYRWV RYVTQANSYV ARI
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PIVIAPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPS GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRIAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NFTSRASFGL EPGAAGQKSD FKETNKMLEW SLKKASIVGG AEHTLRAKLT FSQEFHGNIT
401: KEAGPVSMTF TIPMYNVSKL QVKYLQIAKK SSSYNPYRWV RYVTQANSYV ARI
001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I
Arabidopsis Description
AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.