Factsheet for TraesCS2B01G191200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G172100.1	Wheat	peroxisome	96.45	96.45
EER97557	Sorghum	cytosol, peroxisome, plastid	94.46	94.67
Os07t0620300-01	Rice	plasma membrane	92.9	92.9
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	99.78	88.58
Solyc04g076230.2.1	Tomato	cytosol	82.93	82.74
KRH72454	Soybean	cytosol	72.06	80.65
PGSC0003DMT400024188	Potato	cytosol	80.71	80.53
AT4G24550.2	Thale cress	cytosol	80.49	80.49
GSMUA_Achr10P...	Banana	cytosol	70.73	79.75
Bra010489.1-P	Field mustard	cytosol	79.38	79.03
KRH16840	Soybean	cytosol	79.16	78.98
Bra013813.1-P	Field mustard	cytosol	77.83	78.7
KRH61131	Soybean	cytosol, nucleus	76.5	77.88
GSMUA_Achr6P10200_001	Banana	cytosol	72.28	77.8
CDY34290	Canola	cytosol	78.05	77.7
CDY03442	Canola	cytosol	77.61	77.26
CDX92642	Canola	cytosol	78.71	76.51
KRH51806	Soybean	cytosol	64.97	76.1
CDY24840	Canola	cytosol	78.05	76.03
CDY08937	Canola	cytosol	76.5	75.66
Bra019220.1-P	Field mustard	cytosol	73.61	71.86
CDY11020	Canola	cytosol	33.92	70.51
VIT_18s0001g13000.t01	Wine grape	cytosol	77.38	70.22
TraesCS3B01G286200.2	Wheat	cytosol	32.37	34.03
TraesCS1B01G383200.1	Wheat	cytosol	31.26	32.87
TraesCS2B01G191000.1	Wheat	endoplasmic reticulum, plasma membrane	2.44	30.56
TraesCS6B01G290800.1	Wheat	golgi	29.27	30.14
TraesCS1B01G252100.2	Wheat	cytosol	23.73	25.66
Zm00001d002925_P002	Maize	plastid	76.05	24.43

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005802	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020
GO:GO:0016192	GO:GO:0030124	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD
PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00991	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:TraesCS2B01G191200	EnsemblPlants:TraesCS2B01G191200.1
TIGR:cd09253	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:166472490..166476532

Molecular Weight (calculated)

50626.7 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.220

Length

451 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDHIVFRDY RGEVPKGSAE IFFRKVKFWN EDEAEEAPPV FNIDGVNYVH VKVAGLFFVV TTMVNISPSL LLELLQRIAR VTKDYLGVLN
101: EDSLRKNFIL VYELLDEVID FGYPQTTSTE ALKSYIFNEP IMVDAGRLPP LGPAAMFMQG TKRMPGTAVT KSVVANEPGG KKREEIFVDI IEKISVTFSS
201: SGYILTSEID GTIQMKSYLS GNPEIRLALN EDLGIGKNSS STHDYRSSSG GGSVVLDDCN FHESVQLDSF DIDRTLHLIP PDGEFPVMNY RMTQEFKPPF
301: RVTALIEEAG PSRAEVLLKI RADFPANVTA NTITVQMPVP SYTMRASFEL EAGAVGQTTD FKEGTRRLEW NLKKIVGGSE HTLRAKLTFS QESHGNLTKE
401: AGPVNMNFTI PMYNASKLQV RYLQIAKKSK TYNPYRWVRY VTQANSYVAR L

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.