Factsheet for VIT_18s0001g13000.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51806	Soybean	cytosol	66.2	85.45
KRH61131	Soybean	cytosol, nucleus	73.04	81.94
Solyc04g076230.2.1	Tomato	cytosol	73.44	80.75
KRH72454	Soybean	cytosol	64.79	79.9
KRH16840	Soybean	cytosol	72.64	79.87
AT4G24550.2	Thale cress	cytosol	71.83	79.16
EER97557	Sorghum	cytosol, peroxisome, plastid	71.43	78.89
Bra013813.1-P	Field mustard	cytosol	70.42	78.48
Bra010489.1-P	Field mustard	cytosol	71.03	77.92
PGSC0003DMT400024188	Potato	cytosol	70.83	77.88
TraesCS2B01G191200.1	Wheat	golgi	70.22	77.38
GSMUA_Achr10P...	Banana	cytosol	61.97	77.0
GSMUA_Achr6P10200_001	Banana	cytosol	64.59	76.61
Os07t0620300-01	Rice	plasma membrane	69.42	76.5
CDY34290	Canola	cytosol	69.42	76.16
CDY03442	Canola	cytosol	69.01	75.72
CDX92642	Canola	cytosol	70.62	75.65
CDY08937	Canola	cytosol	68.41	74.56
TraesCS2D01G172100.1	Wheat	peroxisome	67.4	74.28
CDY24840	Canola	cytosol	69.01	74.08
CDY11020	Canola	cytosol	31.19	71.43
Bra019220.1-P	Field mustard	cytosol	66.2	71.21
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	70.22	68.7
VIT_19s0015g02330.t01	Wine grape	extracellular	4.43	30.99
VIT_00s0225g00220.t01	Wine grape	cytosol	25.35	29.44
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	24.55	27.85
VIT_14s0060g00840.t01	Wine grape	cytosol	21.53	25.78
Zm00001d002925_P002	Maize	plastid	59.36	21.01

Protein Annotations

EntrezGene:100254067	wikigene:100254067	Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	ProteinID:CCB45972	ProteinID:CCB45972.1	InterPro:Clathrin_mu	UniProt:F6H1J1	EMBL:FN595227
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
EntrezGene:LOC100254067	wikigene:LOC100254067	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217
PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447
SUPFAM:SSF64356	TIGR:TC60063	UniParc:UPI000210921D	ArrayExpress:VIT_18s0001g13000	EnsemblPlantsGene:VIT_18s0001g13000	EnsemblPlants:VIT_18s0001g13000.t01
RefSeq:XP_002281307	RefSeq:XP_002281307.1	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11105764..11116980

Molecular Weight (calculated)

55371.3 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.167

Length

497 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDNIVFRDY RGEVPKGSAE IFFRKVKFWK EDGEGDAPPV FNVDGVNYFH VKVAGLLFVA TTRVNVSPSL VLELLQRIAR VIKDYLGILN
101: EDSLRKNFVL VYELLDEVID FGYVQTTSTE VLKSYVFNEP IVVDAARLPT LGPASIFMQG TKRMPGTAVT KSVVANEPGG RKREEIFVDI IEKISVTFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EELSIGRGGR SIYDYNSSTG SGTVILDDCN FHESVHLDSF DIDRTLTLVP PDGEFPVMNY RMTQEFKPPF
301: RINALIEEAG ALRAEVILKV RAEFPSSITA NTIQVQMPLP PYTTRVSFEL EPGAVGNTTD FKEANKRLEW GLKKIVGGSE HTLRAKLTFS QELHGNITRE
401: AGPVSMTFTI PMYNASRLQE FQWNPGATAH RNVTGKVFAD IEEVQGLQSI SMGRNISNCI GCLSRWNGGI WRAWGSRSPK AVLREPDEEE GLGLVRA

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.