CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03442	Canola	cytosol	99.12	99.12
Bra013813.1-P	Field mustard	cytosol	94.04	95.52
CDY24840	Canola	cytosol	96.69	94.6
AT4G24550.2	Thale cress	cytosol	94.04	94.46
CDY08937	Canola	cytosol	90.07	89.47
CDX92642	Canola	cytosol	91.17	89.01
CDY11020	Canola	cytosol	39.74	82.95
PGSC0003DMT400024188	Potato	cytosol	82.34	82.52
KRH61131	Soybean	cytosol, nucleus	79.47	81.26
KRH16840	Soybean	cytosol	80.35	80.53
Solyc04g076230.2.1	Tomato	cytosol	80.13	80.31
KRH72454	Soybean	cytosol	71.3	80.15
Os07t0620300-01	Rice	plasma membrane	78.81	79.16
KRH51806	Soybean	cytosol	66.45	78.18
TraesCS2B01G191200.1	Wheat	golgi	77.7	78.05
EER97557	Sorghum	cytosol, peroxisome, plastid	77.48	78.0
GSMUA_Achr10P...	Banana	cytosol	66.67	75.5
TraesCS2D01G172100.1	Wheat	peroxisome	74.61	74.94
GSMUA_Achr6P10200_001	Banana	cytosol	68.43	73.99
VIT_18s0001g13000.t01	Wine grape	cytosol	76.16	69.42
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	77.7	69.29
CDY54239	Canola	cytosol	29.58	31.31
CDY61312	Canola	cytosol	29.58	31.31
CDY63681	Canola	cytosol	29.58	31.31
CDX97909	Canola	cytosol	29.36	31.07
CDY19316	Canola	cytosol	29.36	31.07
CDY46183	Canola	cytosol	29.36	31.07
CDY63680	Canola	cytosol	28.92	30.25
CDY67244	Canola	cytosol	17.66	30.19
CDX87692	Canola	cytosol	28.48	29.45
CDY63050	Canola	cytosol	28.26	29.22
CDX77680	Canola	cytosol	28.26	29.22
CDY35171	Canola	cytosol	28.04	29.0
CDY03204	Canola	cytosol	28.04	29.0
CDX95277	Canola	cytosol	23.84	24.83
CDY41703	Canola	cytosol	23.62	23.73
Zm00001d002925_P002	Maize	plastid	64.46	20.8

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	GO:A0A078H6U0	UniProt:A0A078H6U0	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	EnsemblPlants:CDY34290	ProteinID:CDY34290	ProteinID:CDY34290.1	InterPro:Clathrin_mu	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00056323001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EEFCF4

Description

BnaA01g13930DBnaA01g13930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H6U0]

Coordinates

chrLK032332:+:159387..162629

Molecular Weight (calculated)

51064.2 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.173

Length

453 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PIVIAPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPS GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRIAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NFTSRASFEL EPGAAGQKTD FKESNKMLEW SLKKASIVGG AEHTLRAKLT FSQEFHGNIT
401: KEAGPVSMTF TIPMYNVSKL QVKYLQIAKK SSSYNPYRWV RYVTQANSYV ARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.