CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY46183
CDY63680
CDY63681

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	CDY46183	AT1G60780.1	23543752
AT1G60780.1	CDY63680	AT1G60780.1	23543752
AT1G60780.1	CDY63681	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63681	Canola	cytosol	97.23	98.36
CDY46183	Canola	cytosol	97.23	98.36
AT1G60780.1	Thale cress	cytosol	94.92	96.03
CDY54239	Canola	cytosol	94.69	95.79
CDY61312	Canola	cytosol	94.69	95.79
CDX97909	Canola	cytosol	94.23	95.33
CDY19316	Canola	cytosol	94.0	95.09
Solyc05g013340.2.1	Tomato	plastid	87.99	89.44
KRH69617	Soybean	cytosol	88.22	89.25
KRH45615	Soybean	cytosol	88.22	89.25
VIT_00s0225g00220.t01	Wine grape	cytosol	88.22	89.25
PGSC0003DMT400002906	Potato	mitochondrion	45.27	89.09
KRH74545	Soybean	endoplasmic reticulum	87.99	89.02
KRG99414	Soybean	cytosol	87.99	89.02
Os01t0703600-01	Rice	plasma membrane	86.37	87.18
GSMUA_Achr7P17600_001	Banana	cytosol	86.14	87.15
Zm00001d011676_P001	Maize	extracellular, plasma membrane	86.14	86.95
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	85.91	86.92
Zm00001d043726_P001	Maize	cytosol	85.91	86.71
EES01338	Sorghum	cytosol	85.91	86.71
HORVU3Hr1G066020.1	Barley	cytosol	84.76	85.55
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	84.53	85.51
TraesCS3D01G255100.2	Wheat	cytosol	84.06	84.85
TraesCS3A01G254200.2	Wheat	cytosol	83.83	84.62
TraesCS3B01G286200.2	Wheat	cytosol	83.83	84.62
Os05t0543100-01	Rice	plasma membrane	83.37	83.95
TraesCS1A01G365600.1	Wheat	golgi	83.14	83.92
HORVU1Hr1G079050.3	Barley	cytosol	83.14	83.92
TraesCS1B01G383200.1	Wheat	cytosol	83.14	83.92
Solyc04g026380.2.1	Tomato	cytosol	45.5	83.83
Solyc04g026360.2.1	Tomato	nucleus	43.42	82.82
Zm00001d052338_P001	Maize	cytosol	10.62	77.97
TraesCS1D01G371000.1	Wheat	cytosol	81.99	77.85
Zm00001d036168_P001	Maize	mitochondrion	35.33	62.96
GSMUA_Achr8P31910_001	Banana	cytosol	16.63	44.72
CDY67244	Canola	cytosol	24.25	39.62
CDY63050	Canola	cytosol	38.57	38.13
CDX87692	Canola	cytosol	38.57	38.13
CDY35171	Canola	cytosol	38.34	37.9
CDY03204	Canola	cytosol	38.34	37.9
CDX77680	Canola	cytosol	38.34	37.9
CDY34290	Canola	cytosol	30.25	28.92
CDY03442	Canola	cytosol	30.25	28.92
CDY08937	Canola	cytosol	30.25	28.73
CDY24840	Canola	cytosol	30.72	28.73
CDX92642	Canola	cytosol	30.25	28.23
CDY11020	Canola	cytosol	12.7	25.35
CDX95277	Canola	cytosol	25.4	25.29
CDY41703	Canola	cytosol	24.94	23.95

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	GO:A0A078J954	UniProt:A0A078J954	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	EnsemblPlants:CDY63680	ProteinID:CDY63680	ProteinID:CDY63680.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00039537001
InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338
SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EE82EF	:	:	:

Description

BnaA01g35650DBnaA01g35650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J954]

Coordinates

chrLK034336:+:23387..26119

Molecular Weight (calculated)

49569.6 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.241

Length

433 amino acids

Sequence
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFSKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLSFLHRV IDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGLQYKK NEVFLDVIEN VNILVNSNGQ IIRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRTTK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIERHS KSRVEMLVKA
301: RSQFKERSTA TNVEIELPVP ADASNPTVRT SLGSAAYAPE KDALVWKIKS FPGNKDYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYFKYQSQI SVL

Best Arabidopsis Sequence Match ( AT1G10730.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVTAA QAERFFTKLI ETEGDSQSND PVAYDNGVTY MFVQHSNIYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQFTE ARILSEFIKT DAYRMEVTQR PPMAVTNSVS WRSEGLKFKK NEVFLDVIES VNILVNSNGQ IVRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRI LLEAQGRAIK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAHIERHS RSRVEMLVKA
301: RSQFKDRSYA TSVEIELPVP TDAYNPDVRT SLGSAAYAPE KDALVWKIQY FYGNKEHTLK ADFHLPSIAA EEATPERKAP IRVKFEIPKF IVSGIQVRYL
401: KIIEKSGYQA HPWVRYITMA GEYELRLM

Arabidopsis Description

AP1M1AP-1 complex subunit mu-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAC9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.