Factsheet for Zm00001d011676_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

cytosol 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT1G60780.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043726_P001	Maize	cytosol	99.3	99.3
EES01338	Sorghum	cytosol	99.3	99.3
Os01t0703600-01	Rice	plasma membrane	98.14	98.14
HORVU3Hr1G066020.1	Barley	cytosol	96.04	96.04
TraesCS3D01G255100.2	Wheat	cytosol	95.57	95.57
TraesCS3A01G254200.2	Wheat	cytosol	95.34	95.34
TraesCS3B01G286200.2	Wheat	cytosol	95.1	95.1
GSMUA_Achr7P17600_001	Banana	cytosol	93.71	93.93
VIT_00s0225g00220.t01	Wine grape	cytosol	93.47	93.69
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	92.31	92.52
Zm00001d052338_P001	Maize	cytosol	12.59	91.53
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	90.68	90.89
Solyc05g013340.2.1	Tomato	plastid	89.28	89.91
CDX97909	Canola	cytosol	89.04	89.25
CDY19316	Canola	cytosol	89.04	89.25
Bra019904.1-P	Field mustard	cytosol	88.81	89.02
AT1G60780.1	Thale cress	cytosol	88.34	88.55
KRG99414	Soybean	cytosol	88.34	88.55
KRH45615	Soybean	cytosol	88.34	88.55
Bra031752.1-P	Field mustard	cytosol	87.41	88.44
KRH69617	Soybean	cytosol	88.11	88.32
KRH74545	Soybean	endoplasmic reticulum	88.11	88.32
CDY54239	Canola	cytosol	88.11	88.32
CDY61312	Canola	cytosol	88.11	88.32
Bra031481.1-P	Field mustard	cytosol	87.88	88.08
CDY46183	Canola	cytosol	87.65	87.85
CDY63681	Canola	cytosol	87.65	87.85
PGSC0003DMT400002906	Potato	mitochondrion	44.99	87.73
CDY63680	Canola	cytosol	86.95	86.14
PGSC0003DMT400069426	Potato	cytosol	26.57	85.71
Solyc04g026360.2.1	Tomato	nucleus	44.52	84.14
AT1G10730.1	Thale cress	cytosol	83.92	84.11
Solyc04g026380.2.1	Tomato	cytosol	45.45	82.98
Solyc06g071650.1.1	Tomato	cytosol, plastid	80.42	82.93
Zm00001d036168_P001	Maize	mitochondrion	41.03	72.43
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	36.83	30.27
Zm00001d054005_P006	Maize	cytosol	24.71	24.37
Zm00001d044264_P001	Maize	cytosol	16.78	24.08
Zm00001d006386_P001	Maize	cytosol, plastid	15.62	22.95
Zm00001d049311_P001	Maize	cytosol	11.42	21.68
Zm00001d002305_P001	Maize	mitochondrion	20.75	20.79
Zm00001d032192_P001	Maize	extracellular, golgi	14.45	14.25
Zm00001d021311_P001	Maize	plastid	7.69	14.22
Zm00001d002925_P002	Maize	plastid	30.3	9.26

Protein Annotations

EntrezGene:100272707	Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su
ProteinID:AQK97713.1	ProteinID:AQK97716.1	UniProt:B4FQ20	EMBL:BT039208	EMBL:BT064199	EMBL:BT085533
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217
PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF338	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI00017B78AA	EnsemblPlantsGene:Zm00001d011676	EnsemblPlants:Zm00001d011676_P001
EnsemblPlants:Zm00001d011676_T001	:	:	:	:	:

Description

AP-1 complex subunit mu-2

Coordinates

chr8:+:158309275..158313754

Molecular Weight (calculated)

49050.2 Da

IEP (calculated)

6.536

GRAVY (calculated)

-0.194

Length

429 amino acids

Sequence
(BLAST)

001: MAGAVSALFL LDMKGRVLVW RDYRGDVSAL QAERFFTKLL DKEGDSEVHS PVVYDDAGVT YMFIQHNNVF LLTAARQNCN AASILLFLHR VIDVFKHYFE
101: ELEEESLRDN FVVVYELLDE MMDFGYPQYT EAKILSEFIK TDAYRMEVTQ RPPMAVTNAV SWRSEGIRYK KNEVFLDVVE SVNILVNSNG QIVRSDVVGA
201: LKMRTYLSGM PECKLGLNDR VLLEAQGRAT KGKAIDLDDI KFHQCVRLAR FENDRTISFI PPDGSFDLMT YRLSTQVKPL IWVEAQIEKH SRSRIELMVK
301: ARSQFKERST ATNVEIEVPV PSDATNPNIR TSMGSAAYAP ERDAMVWKIK SFPGGKEYMC RAEFSLPSIT AEEGAPEKKA PIRVKFEIPY FTVSGIQVRY
401: LKIIEKSGYQ ALPWVRYITM AGEYELRLI

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.