Factsheet for Zm00001d017675_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

endoplasmic reticulum 3
extracellular 2
golgi 2
plasma membrane 2
vacuole 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07425	Sorghum	cytosol, extracellular	80.08	95.43
Os02t0690700-01	Rice	plasma membrane	79.89	95.21
TraesCS6D01G251100.1	Wheat	extracellular	79.31	94.52
TraesCS6A01G263800.1	Wheat	extracellular	79.31	94.52
TraesCS6B01G290800.1	Wheat	golgi	79.12	94.29
GSMUA_Achr4P28880_001	Banana	cytosol	77.59	92.47
CDY67244	Canola	cytosol	46.93	92.45
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	77.2	92.01
KRH77207	Soybean	cytosol, extracellular	76.25	90.87
Solyc08g006960.2.1	Tomato	cytosol, extracellular	75.86	90.41
PGSC0003DMT400052825	Potato	cytosol, extracellular	75.67	90.18
KRH58201	Soybean	mitochondrion	75.48	89.95
Bra017537.1-P	Field mustard	cytosol	75.1	89.5
KRH04335	Soybean	endoplasmic reticulum	75.1	89.5
Bra025009.1-P	Field mustard	cytosol	75.1	89.5
CDY35171	Canola	cytosol	75.1	89.5
CDY03204	Canola	cytosol	75.1	89.5
CDY63050	Canola	cytosol	74.9	89.27
CDX87692	Canola	cytosol	74.9	89.27
Solyc06g061150.2.1	Tomato	nucleus	74.9	89.07
Bra022052.1-P	Field mustard	cytosol	74.71	89.04
CDX77680	Canola	cytosol	74.52	88.81
KRH28283	Soybean	cytosol, golgi	74.33	88.58
HORVU6Hr1G066890.2	Barley	mitochondrion	78.54	86.86
AT5G46630.2	Thale cress	cytosol	71.46	84.58
GSMUA_Achr2P12100_001	Banana	cytosol	78.35	68.74
Zm00001d011676_P001	Maize	extracellular, plasma membrane	30.27	36.83
Zm00001d043726_P001	Maize	cytosol	30.27	36.83
Zm00001d036168_P001	Maize	mitochondrion	13.03	27.98
Zm00001d006386_P001	Maize	cytosol, plastid	13.22	23.63
Zm00001d044264_P001	Maize	cytosol	12.64	22.07
Zm00001d052338_P001	Maize	cytosol	2.49	22.03
Zm00001d054005_P006	Maize	cytosol	17.05	20.46
Zm00001d002305_P001	Maize	mitochondrion	14.75	17.99
Zm00001d049311_P001	Maize	cytosol	7.28	16.81
Zm00001d021311_P001	Maize	plastid	5.94	13.36
Zm00001d032192_P001	Maize	extracellular, golgi	10.73	12.87
Zm00001d002925_P002	Maize	plastid	21.26	7.91

Protein Annotations

EntrezGene:100283476	Gene3D:2.60.40.1170	Gene3D:3.30.450.60	MapMan:35.1	UniProt:A0A1D6HGI4	InterPro:AP2_Mu_C_sf
ProteinID:AQK73713.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928
PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278
SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0008429520	EnsemblPlantsGene:Zm00001d017675	EnsemblPlants:Zm00001d017675_P003	EnsemblPlants:Zm00001d017675_T003
SEG:seg	:	:	:	:	:

Description

AP-2 complex subunit mu

Coordinates

chr5:+:203826875..203833441

Molecular Weight (calculated)

58208.7 Da

IEP (calculated)

8.663

GRAVY (calculated)

-0.095

Length

522 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFLY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDDID NCTEIMDFGY PQNLSPEILK LYITQEGVRS PFSSKPSEKP VPNATLQVTG AVGWRREGLV YKKNEVFLDI VESVNLLMSS
201: KGSVLRCDVT GKILMKCFLS GMPDLKLGLN DKIGLEKEAQ LKSRPAKRVV VTHPSLNHLS SIRSTDASCL TAAEQDLSCH CSLTPSTPMA VAALGALDLP
301: TYDIELTPSL CSCSAARRWR FWVNERGMST PPAKDEGKGK NGKTIELDDV TFHQCVNLTR FNSEKTVSFV PPDGEFELMK YRITEGVNLP FRVLPTIKEL
401: GRTRMEINVK VKSVFGAKMF ALGVVVKVPV PKQTAKTSFQ TTSGKAKYNA SIDSLVWKIR KFPGQTEATM SAEVELISTM GEKKSWNRPP IQMEFQVWEK
501: SGYNTVEWVR YITRAGSYEI RC

Best Arabidopsis Sequence Match ( AT5G46630.2 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVRIVIYAF ESTILPKNAM LSSRISKPLC H

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.