Factsheet for TraesCS6D01G251100.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 3
cytosol 2
extracellular 3
plasma membrane 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G263800.1	Wheat	extracellular	100.0	100.0
TraesCS6B01G290800.1	Wheat	golgi	99.77	99.77
EES07425	Sorghum	cytosol, extracellular	98.86	98.86
Os02t0690700-01	Rice	plasma membrane	98.63	98.63
GSMUA_Achr4P28880_001	Banana	cytosol	95.89	95.89
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	95.43	95.43
KRH77207	Soybean	cytosol, extracellular	94.29	94.29
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.06	94.06
PGSC0003DMT400052825	Potato	cytosol, extracellular	93.84	93.84
KRH58201	Soybean	mitochondrion	93.38	93.38
CDY67244	Canola	cytosol	56.39	93.21
KRH04335	Soybean	endoplasmic reticulum	93.15	93.15
Bra017537.1-P	Field mustard	cytosol	92.92	92.92
CDY35171	Canola	cytosol	92.92	92.92
CDY03204	Canola	cytosol	92.92	92.92
Bra025009.1-P	Field mustard	cytosol	92.92	92.92
Solyc06g061150.2.1	Tomato	nucleus	92.92	92.71
CDY63050	Canola	cytosol	92.69	92.69
CDX87692	Canola	cytosol	92.69	92.69
Bra022052.1-P	Field mustard	cytosol	92.47	92.47
KRH28283	Soybean	cytosol, golgi	92.24	92.24
CDX77680	Canola	cytosol	92.01	92.01
HORVU6Hr1G066890.2	Barley	mitochondrion	99.09	91.95
AT5G46630.2	Thale cress	cytosol	88.58	87.98
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	94.52	79.31
GSMUA_Achr2P12100_001	Banana	cytosol	96.8	71.26
TraesCS3D01G255100.2	Wheat	cytosol	37.67	38.46
TraesCS1D01G371000.1	Wheat	cytosol	38.36	36.84
TraesCS2D01G172100.1	Wheat	peroxisome	29.0	28.16
TraesCS1D01G240100.2	Wheat	cytosol	21.46	22.54
TraesCS2D01G171900.1	Wheat	endoplasmic reticulum, plasma membrane	1.83	22.22

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072
PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:TraesCS6D01G251100	EnsemblPlants:TraesCS6D01G251100.1
TIGR:cd09251	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:354900079..354906597

Molecular Weight (calculated)

49214.3 Da

IEP (calculated)

9.697

GRAVY (calculated)

-0.041

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFLY MRISNVYIVI VVSSNANVSC AFKFVVEAVA LFKSYFGGTF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP SDKPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE KEAQLKSRPS KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEINV KVKSVFGAKM FALGVVVKVP VPKQTAKTSF QTTSGKAKYN ASIDSLVWKI RKFPGQTEAT MSAEVELIST MGEKKLANRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITR AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.