Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67244 | Canola | cytosol | 59.18 | 98.49 |
| CDX87692 | Canola | cytosol | 94.33 | 94.98 |
| Bra017537.1-P | Field mustard | cytosol | 94.1 | 94.75 |
| Bra022052.1-P | Field mustard | cytosol | 94.1 | 94.75 |
| Bra025009.1-P | Field mustard | cytosol | 94.1 | 94.75 |
| CDY03204 | Canola | cytosol | 94.1 | 94.75 |
| CDY35171 | Canola | cytosol | 94.1 | 94.75 |
| CDY63050 | Canola | cytosol | 93.88 | 94.52 |
| CDX77680 | Canola | cytosol | 93.65 | 94.29 |
| VIT_02s0012g00910.t01 | Wine grape | cytosol, extracellular | 89.8 | 90.41 |
| KRH77207 | Soybean | cytosol, extracellular | 89.8 | 90.41 |
| GSMUA_Achr4P28880_001 | Banana | cytosol | 89.8 | 90.41 |
| Solyc08g006960.2.1 | Tomato | cytosol, extracellular | 89.57 | 90.18 |
| PGSC0003DMT400052825 | Potato | cytosol, extracellular | 89.34 | 89.95 |
| EES07425 | Sorghum | cytosol, extracellular | 89.12 | 89.73 |
| Os02t0690700-01 | Rice | plasma membrane | 89.12 | 89.73 |
| KRH58201 | Soybean | mitochondrion | 88.89 | 89.5 |
| KRH04335 | Soybean | endoplasmic reticulum | 88.66 | 89.27 |
| KRH28283 | Soybean | cytosol, golgi | 88.66 | 89.27 |
| TraesCS6A01G263800.1 | Wheat | extracellular | 87.98 | 88.58 |
| TraesCS6D01G251100.1 | Wheat | extracellular | 87.98 | 88.58 |
| TraesCS6B01G290800.1 | Wheat | golgi | 87.76 | 88.36 |
| Solyc06g061150.2.1 | Tomato | nucleus | 87.53 | 87.93 |
| HORVU6Hr1G066890.2 | Barley | mitochondrion | 87.07 | 81.36 |
| Zm00001d017675_P003 | Maize | cytosol, endoplasmic reticulum | 84.58 | 71.46 |
| GSMUA_Achr2P12100_001 | Banana | cytosol | 90.48 | 67.06 |
| AT1G10730.1 | Thale cress | cytosol | 37.87 | 39.02 |
| AT1G60780.1 | Thale cress | cytosol | 37.41 | 38.55 |
| AT4G24550.2 | Thale cress | cytosol | 28.12 | 27.49 |
| AT1G56590.1 | Thale cress | cytosol | 21.09 | 22.41 |
Protein Annotations
| Gene3D:2.60.40.1170 | MapMan:22.1.3.3 | Gene3D:3.30.450.60 | EntrezGene:834706 | ProteinID:AED95408.1 | InterPro:AP2_Mu_C_sf |
| ArrayExpress:AT5G46630 | EnsemblPlantsGene:AT5G46630 | RefSeq:AT5G46630 | TAIR:AT5G46630 | RefSeq:AT5G46630-TAIR-G | EnsemblPlants:AT5G46630.2 |
| TAIR:AT5G46630.2 | Unigene:At.23058 | InterPro:Clathrin_mu | InterPro:Clathrin_mu_CS | UniProt:F4KHJ7 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0006897 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 |
| GO:GO:0030131 | InterPro:IPR028565 | InterPro:Longin-like_dom_sf | InterPro:MHD | RefSeq:NP_974895.1 | PFAM:PF00928 |
| PIRSF:PIRSF005992 | PO:PO:0000013 | PO:PO:0000014 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00314 | ScanProsite:PS00990 | PFscan:PS51072 | PANTHER:PTHR10529 | PANTHER:PTHR10529:SF278 |
| SUPFAM:SSF49447 | SUPFAM:SSF64356 | UniParc:UPI000034F2CC | SEG:seg | : | : |
Description
Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
Coordinates
chr5:+:18920438..18923445
Molecular Weight (calculated)
49474.8 Da
IEP (calculated)
9.815
GRAVY (calculated)
-0.022
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVRIVIYAF ESTILPKNAM LSSRISKPLC H
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVRIVIYAF ESTILPKNAM LSSRISKPLC H
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.