Factsheet for VIT_02s0012g00910.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 2
cytosol 3
extracellular 3
plasma membrane 3
nucleus 1
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	extracellular
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P28880_001	Banana	cytosol	97.26	97.26
KRH77207	Soybean	cytosol, extracellular	96.58	96.58
EES07425	Sorghum	cytosol, extracellular	96.58	96.58
Os02t0690700-01	Rice	plasma membrane	96.35	96.35
Solyc08g006960.2.1	Tomato	cytosol, extracellular	96.35	96.35
PGSC0003DMT400052825	Potato	cytosol, extracellular	96.12	96.12
TraesCS6A01G263800.1	Wheat	extracellular	95.43	95.43
TraesCS6D01G251100.1	Wheat	extracellular	95.43	95.43
TraesCS6B01G290800.1	Wheat	golgi	95.21	95.21
KRH58201	Soybean	mitochondrion	94.98	94.98
CDY03204	Canola	cytosol	94.75	94.75
CDY35171	Canola	cytosol	94.75	94.75
Bra025009.1-P	Field mustard	cytosol	94.75	94.75
KRH04335	Soybean	endoplasmic reticulum	94.75	94.75
Bra017537.1-P	Field mustard	cytosol	94.75	94.75
CDY67244	Canola	cytosol	57.31	94.72
CDY63050	Canola	cytosol	94.52	94.52
CDX87692	Canola	cytosol	94.52	94.52
Solyc06g061150.2.1	Tomato	nucleus	94.52	94.31
KRH28283	Soybean	cytosol, golgi	94.29	94.29
Bra022052.1-P	Field mustard	cytosol	94.29	94.29
CDX77680	Canola	cytosol	93.84	93.84
AT5G46630.2	Thale cress	cytosol	90.41	89.8
HORVU6Hr1G066890.2	Barley	mitochondrion	94.52	87.71
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	92.01	77.2
GSMUA_Achr2P12100_001	Banana	cytosol	98.17	72.27
VIT_19s0015g02330.t01	Wine grape	extracellular	9.59	59.15
VIT_00s0225g00220.t01	Wine grape	cytosol	38.81	39.72
VIT_18s0001g13000.t01	Wine grape	cytosol	27.85	24.55
VIT_14s0060g00840.t01	Wine grape	cytosol	21.23	22.41

Protein Annotations

EntrezGene:100250494	wikigene:100250494	Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf
ProteinID:CBI33916	ProteinID:CBI33916.3	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	UniProt:D7TU01	EMBL:FN596247
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
EntrezGene:LOC100250494	wikigene:LOC100250494	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447
SUPFAM:SSF64356	TIGR:TC59962	UniParc:UPI00015C90E1	ArrayExpress:VIT_02s0012g00910	EnsemblPlantsGene:VIT_02s0012g00910	EnsemblPlants:VIT_02s0012g00910.t01
unigene:Vvi.3013	RefSeq:XP_002281297	RefSeq:XP_002281297.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:6818228..6834662

Molecular Weight (calculated)

49332.4 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.030

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRMHIM QTKELGTCPV RQIGGCSFFY MRISNVYIVI VVSSNANVAC AFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP SDKPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE KESQLKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVIKIP VPKQTAKTSF QVTSGRAKYN AATDCLIWKI RKFPGQTEPT MSAEVELIST MAEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.