Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 4
- nucleus 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_00s0225g00220.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G60780.1 | VIT_00s0225g00220.t01 | AT1G60780.1 | 23543752 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr7P17600_001 | Banana | cytosol | 93.93 | 93.93 |
Zm00001d043726_P001 | Maize | cytosol | 93.93 | 93.71 |
Os01t0703600-01 | Rice | plasma membrane | 93.93 | 93.71 |
EES01338 | Sorghum | cytosol | 93.93 | 93.71 |
Zm00001d011676_P001 | Maize | extracellular, plasma membrane | 93.69 | 93.47 |
Solyc05g013340.2.1 | Tomato | plastid | 92.76 | 93.19 |
GSMUA_Achr2P06510_001 | Banana | cytosol, endoplasmic reticulum | 92.99 | 92.99 |
HORVU3Hr1G066020.1 | Barley | cytosol | 92.76 | 92.54 |
TraesCS3D01G255100.2 | Wheat | cytosol | 92.76 | 92.54 |
TraesCS3A01G254200.2 | Wheat | cytosol | 92.52 | 92.31 |
TraesCS3B01G286200.2 | Wheat | cytosol | 92.29 | 92.07 |
KRH45615 | Soybean | cytosol | 92.06 | 92.06 |
KRG99414 | Soybean | cytosol | 92.06 | 92.06 |
GSMUA_Achr1P25430_001 | Banana | cytosol, extracellular | 91.36 | 91.36 |
KRH74545 | Soybean | endoplasmic reticulum | 91.12 | 91.12 |
KRH69617 | Soybean | cytosol | 91.12 | 91.12 |
PGSC0003DMT400002906 | Potato | mitochondrion | 46.73 | 90.91 |
Os05t0543100-01 | Rice | plasma membrane | 90.89 | 90.47 |
CDY19316 | Canola | cytosol | 90.42 | 90.42 |
CDX97909 | Canola | cytosol | 90.42 | 90.42 |
Bra031481.1-P | Field mustard | cytosol | 90.19 | 90.19 |
Bra019904.1-P | Field mustard | cytosol | 90.19 | 90.19 |
AT1G60780.1 | Thale cress | cytosol | 89.95 | 89.95 |
CDY63681 | Canola | cytosol | 89.95 | 89.95 |
CDY61312 | Canola | cytosol | 89.95 | 89.95 |
CDY54239 | Canola | cytosol | 89.95 | 89.95 |
Bra031752.1-P | Field mustard | cytosol | 89.02 | 89.86 |
CDY46183 | Canola | cytosol | 89.72 | 89.72 |
HORVU1Hr1G079050.3 | Barley | cytosol | 89.72 | 89.51 |
TraesCS1A01G365600.1 | Wheat | golgi | 89.72 | 89.51 |
TraesCS1B01G383200.1 | Wheat | cytosol | 89.72 | 89.51 |
CDY63680 | Canola | cytosol | 89.25 | 88.22 |
Solyc04g026360.2.1 | Tomato | nucleus | 46.03 | 86.78 |
Zm00001d052338_P001 | Maize | cytosol | 11.92 | 86.44 |
Solyc04g026380.2.1 | Tomato | cytosol | 47.2 | 85.96 |
AT1G10730.1 | Thale cress | cytosol | 85.75 | 85.75 |
TraesCS1D01G371000.1 | Wheat | cytosol | 88.55 | 83.11 |
Zm00001d036168_P001 | Maize | mitochondrion | 38.78 | 68.31 |
GSMUA_Achr8P31910_001 | Banana | cytosol | 18.93 | 50.31 |
VIT_02s0012g00910.t01 | Wine grape | cytosol, extracellular | 39.72 | 38.81 |
VIT_19s0015g02330.t01 | Wine grape | extracellular | 6.07 | 36.62 |
VIT_14s0060g00840.t01 | Wine grape | cytosol | 25.7 | 26.51 |
VIT_18s0001g13000.t01 | Wine grape | cytosol | 29.44 | 25.35 |
Protein Annotations
EntrezGene:100251026 | wikigene:100251026 | Gene3D:2.60.40.1170 | MapMan:22.1.2.3 | Gene3D:3.30.450.60 | InterPro:AP2_Mu_C_sf |
InterPro:AP_mu_sigma_su | ProteinID:CBI23375 | ProteinID:CBI23375.3 | InterPro:Clathrin_mu | InterPro:Clathrin_mu_CS | UniProt:D7SYS4 |
EMBL:FN595256 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 |
GO:GO:0006886 | GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030131 |
InterPro:IPR028565 | EntrezGene:LOC100251026 | wikigene:LOC100251026 | InterPro:Longin-like_dom_sf | InterPro:MHD | PFAM:PF00928 |
PFAM:PF01217 | PIRSF:PIRSF005992 | PRINTS:PR00314 | ScanProsite:PS00990 | ScanProsite:PS00991 | PFscan:PS51072 |
PANTHER:PTHR10529 | PANTHER:PTHR10529:SF338 | SUPFAM:SSF49447 | SUPFAM:SSF64356 | TIGR:TC51737 | TIGR:TC70729 |
UniParc:UPI00015CD85D | ArrayExpress:VIT_00s0225g00220 | EnsemblPlantsGene:VIT_00s0225g00220 | EnsemblPlants:VIT_00s0225g00220.t01 | unigene:Vvi.10330 | RefSeq:XP_002274463 |
RefSeq:XP_002274463.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:14737670..14743845
Molecular Weight (calculated)
49017.0 Da
IEP (calculated)
6.292
GRAVY (calculated)
-0.246
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGAASALFL LDIKGRVLVW RDYRGDVSAV QAERFFAKLM EKEGDPESQD PVVYDNGVTY MFIQHNNVFL MTASRQNCNA ASHLLFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE AKILSEFIKT DAYRMEVSQR PPMAVTNAVS WRSEGIRYKK NEVFLDVVES VNILVNSNGQ IIRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRV LLEAQGRSTK GKAIDLDDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAQVERHS RSRIEIMVKA
301: RSQFKERSTA TNVEIELPVP SDATNPNIRT SMGSAAYAPE NDALLWKIKS FPGGKEYMLR AEFSLPSITA EEGAPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLI
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE AKILSEFIKT DAYRMEVSQR PPMAVTNAVS WRSEGIRYKK NEVFLDVVES VNILVNSNGQ IIRSDVVGAL
201: KMRTYLSGMP ECKLGLNDRV LLEAQGRSTK GKAIDLDDIK FHQCVRLARF ENDRTISFIP PDGSFDLMTY RLSTQVKPLI WVEAQVERHS RSRIEIMVKA
301: RSQFKERSTA TNVEIELPVP SDATNPNIRT SMGSAAYAPE NDALLWKIKS FPGGKEYMLR AEFSLPSITA EEGAPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLI
001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV
Arabidopsis Description
AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.