Factsheet for Bra031481.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3
plastid 2
plasma membrane 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, golgi, mitochondrion, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra031481.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60780.1	Bra031481.1-P	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63681	Canola	cytosol	99.77	99.77
AT1G60780.1	Thale cress	cytosol	97.43	97.43
Bra031752.1-P	Field mustard	cytosol	96.03	96.93
Bra019904.1-P	Field mustard	cytosol	96.26	96.26
PGSC0003DMT400002906	Potato	mitochondrion	46.73	90.91
Solyc05g013340.2.1	Tomato	plastid	90.19	90.61
KRH45615	Soybean	cytosol	90.42	90.42
KRH69617	Soybean	cytosol	90.42	90.42
VIT_00s0225g00220.t01	Wine grape	cytosol	90.19	90.19
KRH74545	Soybean	endoplasmic reticulum	90.19	90.19
KRG99414	Soybean	cytosol	90.19	90.19
GSMUA_Achr7P17600_001	Banana	cytosol	88.08	88.08
Zm00001d011676_P001	Maize	extracellular, plasma membrane	88.08	87.88
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	87.85	87.85
Zm00001d043726_P001	Maize	cytosol	87.85	87.65
EES01338	Sorghum	cytosol	87.85	87.65
Os01t0703600-01	Rice	plasma membrane	87.85	87.65
HORVU3Hr1G066020.1	Barley	cytosol	86.68	86.48
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	86.45	86.45
TraesCS3D01G255100.2	Wheat	cytosol	85.98	85.78
TraesCS3B01G286200.2	Wheat	cytosol	85.75	85.55
TraesCS3A01G254200.2	Wheat	cytosol	85.75	85.55
Solyc04g026380.2.1	Tomato	cytosol	46.96	85.53
Os05t0543100-01	Rice	plasma membrane	85.51	85.12
HORVU1Hr1G079050.3	Barley	cytosol	85.28	85.08
TraesCS1B01G383200.1	Wheat	cytosol	85.28	85.08
TraesCS1A01G365600.1	Wheat	golgi	85.28	85.08
Zm00001d052338_P001	Maize	cytosol	11.45	83.05
Solyc04g026360.2.1	Tomato	nucleus	43.93	82.82
TraesCS1D01G371000.1	Wheat	cytosol	84.11	78.95
Zm00001d036168_P001	Maize	mitochondrion	35.98	63.37
GSMUA_Achr8P31910_001	Banana	cytosol	17.52	46.58
Bra025009.1-P	Field mustard	cytosol	39.49	38.58
Bra022052.1-P	Field mustard	cytosol	39.25	38.36
Bra017537.1-P	Field mustard	cytosol	39.25	38.36
Bra010489.1-P	Field mustard	cytosol	32.24	30.46
Bra013813.1-P	Field mustard	cytosol	31.31	30.04
Bra019220.1-P	Field mustard	cytosol	29.91	27.71
Bra027924.1-P	Field mustard	cytosol	26.17	27.25

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra031481
EnsemblPlants:Bra031481.1	EnsemblPlants:Bra031481.1-P	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf
UniProt:M4ERQ5	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF338	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI0002544E49	:	:	:	:

Description

AT1G60780 (E=2e-242) HAP13 | HAP13 (HAPLESS 13); protein binding

Coordinates

chrA01:-:17039092..17041686

Molecular Weight (calculated)

48999.9 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.238

Length

428 amino acids

Sequence
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFSKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLSFLHRV IDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGLQYKK NEVFLDVIEN VNILVNSNGQ IIRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRTTK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIERHS KSRVEMLVKA
301: RSQFKERSTA TNVEIELPVP ADASNPTVRT SLGSAAYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Best Arabidopsis Sequence Match ( AT1G60780.1 )
(BLAST)

001: MAGAASALFL LDIKGRVLVW RDYRGDVSAA QAERFFTKLI EKEGDSQSND PVAYDNGVTY MFVQHSNVYL MIASRQNCNA ASLLFFLHRV VDVFKHYFEE
101: LEEESLRDNF VVVYELLDEM MDFGYPQYTE ARILSEFIKT DAYRMEVTQR PPMAVTNAVS WRSEGIQYKK NEVFLDVIEN VNILVNSNGQ IVRSDVVGAL
201: KMRTYLTGMP ECKLGLNDRV LLEAQGRATK GKAIDLEDIK FHQCVRLARF ENDRTISFIP PDGAFDLMTY RLSTQVKPLI WVEAQIESHS RSRVEMLIKA
301: RSQFKERSTA TNVEIELPVP TDASNPTVRT SLGSASYAPE KDALVWKIKS FPGNKEYMLR AEFHLPSITA EEATPERKAP IRVKFEIPYF TVSGIQVRYL
401: KIIEKSGYQA LPWVRYITMA GEYELRLV

Arabidopsis Description

AP1M2AP-1 complex subunit mu-2 [Source:UniProtKB/Swiss-Prot;Acc:O22715]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.