Factsheet for Bra010489.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G24550.2	Thale cress	cytosol	95.36	95.79
Bra013813.1-P	Field mustard	cytosol	94.26	95.74
CDY08937	Canola	cytosol	96.25	95.61
Bra019220.1-P	Field mustard	cytosol	85.43	83.77
Solyc04g076230.2.1	Tomato	cytosol	82.56	82.74
KRH16840	Soybean	cytosol	80.57	80.75
KRH72454	Soybean	cytosol	71.74	80.65
EER97557	Sorghum	cytosol, peroxisome, plastid	79.25	79.78
TraesCS2B01G191200.1	Wheat	golgi	79.03	79.38
KRH61131	Soybean	cytosol, nucleus	77.48	79.23
PGSC0003DMT400024188	Potato	cytosol	78.59	78.76
Os07t0620300-01	Rice	plasma membrane	77.48	77.83
KRH51806	Soybean	cytosol	66.0	77.66
TraesCS2D01G172100.1	Wheat	peroxisome	75.94	76.27
GSMUA_Achr10P...	Banana	cytosol	66.23	75.0
GSMUA_Achr6P10200_001	Banana	cytosol	68.65	74.22
VIT_18s0001g13000.t01	Wine grape	cytosol	77.92	71.03
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	79.03	70.47
Bra019904.1-P	Field mustard	cytosol	30.68	32.48
Bra031752.1-P	Field mustard	cytosol	30.24	32.31
Bra031481.1-P	Field mustard	cytosol	30.46	32.24
Bra025009.1-P	Field mustard	cytosol	27.15	28.08
Bra022052.1-P	Field mustard	cytosol	27.15	28.08
Bra017537.1-P	Field mustard	cytosol	26.93	27.85
Bra027924.1-P	Field mustard	cytosol	24.06	26.52
Zm00001d002925_P002	Maize	plastid	66.23	21.37

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra010489
EnsemblPlants:Bra010489.1	EnsemblPlants:Bra010489.1-P	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M4D1Y9	InterPro:MHD
PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0002545C31	:	:

Description

AT4G24550 (E=2e-250) | clathrin adaptor complexes medium subunit family protein

Coordinates

chrA08:-:14791640..14794608

Molecular Weight (calculated)

50941.0 Da

IEP (calculated)

7.080

GRAVY (calculated)

-0.163

Length

453 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PILIAPARLQ PIDPAAIFTQ GSKRMPGTAV TKSVVANDPG GRKREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG ASVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDVVA NTITIQMPLP NYTSRASFEL ELGAAGQKTD FKETSKMLEW SFKKASIVGG AEHTLRAKLT FSQEFHGNIT
401: KEAGPVSMTF TIPMYNVSKL QVKYLQIAKN SSSQNPYRWV RYVTQANSYV ARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.