Factsheet for Zm00001d002925_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97557	Sorghum	cytosol, peroxisome, plastid	25.78	80.44
Os07t0620300-01	Rice	plasma membrane	25.0	77.83
TraesCS2B01G191200.1	Wheat	golgi	24.43	76.05
TraesCS2D01G172100.1	Wheat	peroxisome	24.0	74.72
CDY11020	Canola	cytosol	10.76	69.59
GSMUA_Achr10P...	Banana	cytosol	19.8	69.5
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	24.64	68.11
AT4G24550.2	Thale cress	cytosol	21.65	67.41
Solyc04g076230.2.1	Tomato	cytosol	21.65	67.26
Bra010489.1-P	Field mustard	cytosol	21.37	66.23
Bra013813.1-P	Field mustard	cytosol	21.01	66.14
KRH61131	Soybean	cytosol, nucleus	20.8	65.91
GSMUA_Achr6P10200_001	Banana	cytosol	19.66	65.87
PGSC0003DMT400024188	Potato	cytosol	21.15	65.71
KRH16840	Soybean	cytosol	21.08	65.49
CDY08937	Canola	cytosol	21.23	65.35
CDX92642	Canola	cytosol	21.44	64.87
KRH72454	Soybean	cytosol	18.52	64.52
CDY34290	Canola	cytosol	20.8	64.46
Bra019220.1-P	Field mustard	cytosol	21.08	64.07
CDY03442	Canola	cytosol	20.66	64.02
KRH51806	Soybean	cytosol	17.45	63.64
CDY24840	Canola	cytosol	20.8	63.07
VIT_18s0001g13000.t01	Wine grape	cytosol	21.01	59.36
Zm00001d052338_P001	Maize	cytosol	1.35	32.2
Zm00001d011676_P001	Maize	extracellular, plasma membrane	9.26	30.3
Zm00001d043726_P001	Maize	cytosol	9.26	30.3
Zm00001d054005_P006	Maize	cytosol	6.98	22.53
Zm00001d044264_P001	Maize	cytosol	4.77	22.41
Zm00001d006386_P001	Maize	cytosol, plastid	4.63	22.26
Zm00001d036168_P001	Maize	mitochondrion	3.77	21.81
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	7.91	21.26
Zm00001d002305_P001	Maize	mitochondrion	5.77	18.93
Zm00001d049311_P001	Maize	cytosol	2.92	18.14
Zm00001d021311_P001	Maize	plastid	2.28	13.79
Zm00001d032192_P001	Maize	extracellular, golgi	4.27	13.79

Protein Annotations

EntrezGene:100272249	EntrezGene:103646175	Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	UniProt:A0A1D6E563
InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu_CS	ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	ProteinID:ONM15642.1
PFAM:PF00928	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI00084530A8	EnsemblPlantsGene:Zm00001d002925	EnsemblPlants:Zm00001d002925_P002	EnsemblPlants:Zm00001d002925_T002	SEG:seg

Description

AP-4 complex subunit mu

Coordinates

chr2:+:26726246..26737510

Molecular Weight (calculated)

155854.0 Da

IEP (calculated)

6.863

GRAVY (calculated)

-0.677

Length

1404 amino acids

Sequence
(BLAST)

0001: MHSPRSRIRV RDPHPNPHRP SGGGRGGGGG CLRRRSPPAP PSPRYRRRPQ RHTPPPRRGS DPHPDISAIA RHRILLEAGR FAAHYLVAQG VLPDHVLRDR
0101: EDPPASRGRN LDGGGDPRSS WNDGDWARAW EDDDRQARKS TRWDRRSQSF DDRGKKYHDA GRDVDRGARR TRDYDEPRRP PMSRSYSHND RRPSGSADGG
0201: RVDPRSRSRS RSRARIRRDL DHTKVTDSGI IPADAADDGD CDVHYGHVDE MPRQQRRVPS SVVVADSADQ AMATEDGEAE FDIHGLNRTR DVSEDEDGEF
0301: AAARLNGEDD VHPLKSVKEP ALHRGSQLSN AVEDREAANA PTMVMDACTR ETSGEDNAYS EATNEMVAPH PHSEGKPELP ASCRPFDLNV VETPDACEMA
0401: GDPQADHVSD LVGWIHQQTN CHASEFQGQD ERHMLKNGHD LIRYDLNSEA VEDAQDIHLL EDEKLPVGLG IDAHDTTRIQ CWRGSHLRLN QNAGELEHEN
0501: DCVIGEQLLL SDGMDGHLVR DYQMASEPKM GVYDLHSYNL ESEKMLLDDG AEKHAHDNCH LHDGQVLFNQ SANLQAHNRA NERTIPVINL EDDDYEEQSD
0601: IREFLESNFH AGAYVCVQAI FSVMHGHNIQ LHLLVVVICC RGDAWPQYSL MENPACVTDG RSGPMNTITA TPTHHARLRA CDPTDTHSRE ARGRRGKAAR
0701: PAAQDICACD PEEASARWDD IAVLRSVAAR RPHRLPRLIT LENRLDIQHN NVDGVNYIHV KVAGLFFVVT TMVNVSPSLL LELLQRIARV TKDYLGVLNE
0801: DSLRKNFILV YELLDEVIDF GYPQTTSTEV LKSYIFNEPI MVDAGRLPPL GPAAMFMQGT KRMPGTAVTK SVVATEPGGK KREEIFVDII ERISVTFSSS
0901: GYILTSEIDG TIQMKSYLTG NPEIRLALNE DLSIGRTGSS SYASRRWRQV AAREARRLWP YAGVKNPYDH VVRGCLQIAH GRLGLEVRRM AHGLGREASI
1001: QRGHGSRSAP EQELHVRQEL GHGLRLRRWD YERRTGAGCL AGRDAGSRGG RGGRRRREAV VRLAHALAAE RHRSEAAAGL QQHHSVLDEA EVEASLAEDQ
1101: VPVRGRGHQP SGNRSVGFSF SPNQGTNSCN AQGPVPPLGT GARVLGEAGK DATLELGDVE AAEGADGASV RFRVVGAVAV GREELGAGDR AEITGASGQE
1201: GRRRGRGDYR SSSGGGTVIL DDCNFHESVH LDSFDIDRTL TLIPPDGEFP VMNYRMTQEF KPPFRVTALI EEAGPARAEV LLKIRADFSA SATANTIVVQ
1301: MPVPAYTMRA SFELEAGAVG QTTDFKEGSR RLEWNLKKAR NITKEAGPVN MNFTIPMYNA SKLQARPYTF CMVRYLQIAK KSKAYNPYRW VRYVTQANSY
1401: VARL

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.