Factsheet for PGSC0003DMT400024188

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g076230.2.1	Tomato	cytosol	93.58	93.58
KRH61131	Soybean	cytosol, nucleus	82.08	83.75
CDY34290	Canola	cytosol	82.52	82.34
KRH16840	Soybean	cytosol	82.3	82.3
Os07t0620300-01	Rice	plasma membrane	81.64	81.82
KRH72454	Soybean	cytosol	72.79	81.64
CDY03442	Canola	cytosol	81.64	81.46
TraesCS2B01G191200.1	Wheat	golgi	80.53	80.71
EER97557	Sorghum	cytosol, peroxisome, plastid	80.09	80.44
KRH51806	Soybean	cytosol	68.36	80.26
AT4G24550.2	Thale cress	cytosol	79.87	80.04
CDY24840	Canola	cytosol	81.64	79.7
Bra013813.1-P	Field mustard	cytosol	78.54	79.6
Bra010489.1-P	Field mustard	cytosol	78.76	78.59
TraesCS2D01G172100.1	Wheat	peroxisome	77.21	77.38
CDX92642	Canola	cytosol	78.32	76.29
CDY08937	Canola	cytosol	76.33	75.66
GSMUA_Achr10P...	Banana	cytosol	66.59	75.25
GSMUA_Achr6P10200_001	Banana	cytosol	68.58	73.99
Bra019220.1-P	Field mustard	cytosol	75.22	73.59
CDY11020	Canola	cytosol	34.96	72.81
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	80.31	71.46
VIT_18s0001g13000.t01	Wine grape	cytosol	77.88	70.83
PGSC0003DMT400002906	Potato	mitochondrion	14.82	30.45
PGSC0003DMT400052825	Potato	cytosol, extracellular	27.43	28.31
PGSC0003DMT400069426	Potato	cytosol	7.74	26.32
PGSC0003DMT400007122	Potato	cytosol	23.23	26.18
Zm00001d002925_P002	Maize	plastid	65.71	21.15

Protein Annotations

EntrezGene:102581462	Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030124	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M1AJM3
InterPro:MHD	PFAM:PF00928	EnsemblPlantsGene:PGSC0003DMG400009348	PGSC:PGSC0003DMG400009348	EnsemblPlants:PGSC0003DMT400024188	PIRSF:PIRSF005992
PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI000294B75F	RefSeq:XP_006338068.1	SEG:seg	:	:	:

Description

Clathrin coat assembly [Source:PGSC_GENE;Acc:PGSC0003DMG400009348]

Coordinates

chr4:-:64909930..64917433

Molecular Weight (calculated)

50541.7 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.158

Length

452 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDSIVFRDY RGDVLKGSAE IFFRKVKFWK EDGGEEAPPV FNVDGVNYFH VKVVGLLFVA TSRTNLSPSL VLELLQRIAR VIKDYLGVLN
101: EDSLRKNFVL VYELLDEVVD FGYVQTTSTE ILKSYIFNEP IMIDAGRLPP LGPAAMFMQG SKRMPGTAIT KSVVANEPGG RKREEIFVDI IEKISITFSS
201: SGYILTSEID GTIQMKSYLT GNPEIKLALN EDLGIGRAGG RSGYDYGGSA GSGAVVLDDC NFHESVQLDS FDVDRTLTLV PPDGEFPVMN YRITQEFKPP
301: FRINTLIEEA GSLKAEVILK IRAEFPSDIT ANTILVQMPL PTYTSRVSFE LEPGTVGQTT DFKESNKRLE WSLKKVVGGS DHTLRAKLTF SQESHGNITK
401: EAGPVSMTFT IPMYNPSRLQ VKYLQIAKKS KTYNPYRWVR YVTQANSYVA RI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.