Factsheet for Bra013813.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 2
plasma membrane 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G24550.2	Thale cress	cytosol	96.64	95.57
Bra010489.1-P	Field mustard	cytosol	95.74	94.26
CDY34290	Canola	cytosol	95.52	94.04
CDY03442	Canola	cytosol	94.84	93.38
CDY24840	Canola	cytosol	92.38	88.98
Bra019220.1-P	Field mustard	cytosol	86.1	83.12
Solyc04g076230.2.1	Tomato	cytosol	83.63	82.52
KRH16840	Soybean	cytosol	81.39	80.31
KRH72454	Soybean	cytosol	72.2	79.9
KRH61131	Soybean	cytosol, nucleus	79.15	79.68
PGSC0003DMT400024188	Potato	cytosol	79.6	78.54
EER97557	Sorghum	cytosol, peroxisome, plastid	79.15	78.44
KRH51806	Soybean	cytosol	67.49	78.18
TraesCS2B01G191200.1	Wheat	golgi	78.7	77.83
Os07t0620300-01	Rice	plasma membrane	76.46	75.61
TraesCS2D01G172100.1	Wheat	peroxisome	75.56	74.72
GSMUA_Achr10P...	Banana	cytosol	65.25	72.75
GSMUA_Achr6P10200_001	Banana	cytosol	66.82	71.12
VIT_18s0001g13000.t01	Wine grape	cytosol	78.48	70.42
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	78.7	69.09
Bra019904.1-P	Field mustard	cytosol	30.27	31.54
Bra031752.1-P	Field mustard	cytosol	29.82	31.37
Bra031481.1-P	Field mustard	cytosol	30.04	31.31
Bra025009.1-P	Field mustard	cytosol	27.8	28.31
Bra022052.1-P	Field mustard	cytosol	27.8	28.31
Bra017537.1-P	Field mustard	cytosol	27.58	28.08
Bra027924.1-P	Field mustard	cytosol	24.44	26.52
Zm00001d002925_P002	Maize	plastid	66.14	21.01

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra013813
EnsemblPlants:Bra013813.1	EnsemblPlants:Bra013813.1-P	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M4DBF3	InterPro:MHD
PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0002546467	:	:

Description

AT4G24550 (E=4e-247) | clathrin adaptor complexes medium subunit family protein

Coordinates

chrA01:+:7884981..7887969

Molecular Weight (calculated)

50362.4 Da

IEP (calculated)

7.679

GRAVY (calculated)

-0.166

Length

446 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFVDGVNYFH VKVVGLYFVA TTRVNVSPSL VLELLQRIAR VIKDYLGVLN
101: EDSFRKNFVL VYELLDEVID FGYVQTTSTE VLKSYVFNEP IVIAPARLQP IDPAAIFTQG AKRMPGTAVT KSVVANDPSG RRREEIFVDI IEKISVTFSS
201: SGYILTSEID GTIQMKSYLS GNPEIRIALN EDLNIGRDYR SSSGSGVILD DCNFHESVRL DSFDSDRTLS LVPPDGEFPV MNYRMTQEFK PPFHVNTLIE
301: EAGRLKAEVI IKIRAEFPSD IIANTITVQM PLPNFTSRAS FELEPGAAGQ KTDFKESNKM LEWSLKKASI VGGAEHTLRA KLTFSQEFHG NITKEAGPVS
401: MTFTIPMYNV SKLQVKYLQI AKKSSSYNPY RWVRYMTQAN SYVARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.