Factsheet for Os07t0620300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
peroxisome 2
plasma membrane 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER97557	Sorghum	cytosol, peroxisome, plastid	95.34	95.56
TraesCS2B01G191200.1	Wheat	golgi	92.9	92.9
TraesCS2D01G172100.1	Wheat	peroxisome	89.36	89.36
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	92.68	82.28
PGSC0003DMT400024188	Potato	cytosol	81.82	81.64
GSMUA_Achr10P...	Banana	cytosol	72.06	81.25
Solyc04g076230.2.1	Tomato	cytosol	80.93	80.75
KRH72454	Soybean	cytosol	71.18	79.65
GSMUA_Achr6P10200_001	Banana	cytosol	73.39	79.0
CDY34290	Canola	cytosol	79.16	78.81
KRH61131	Soybean	cytosol, nucleus	77.38	78.78
AT4G24550.2	Thale cress	cytosol	78.71	78.71
CDY03442	Canola	cytosol	78.71	78.37
KRH16840	Soybean	cytosol	78.49	78.32
Bra010489.1-P	Field mustard	cytosol	77.83	77.48
CDY24840	Canola	cytosol	79.38	77.32
Bra013813.1-P	Field mustard	cytosol	75.61	76.46
KRH51806	Soybean	cytosol	64.97	76.1
CDX92642	Canola	cytosol	76.72	74.57
CDY08937	Canola	cytosol	75.17	74.34
Bra019220.1-P	Field mustard	cytosol	72.51	70.78
VIT_18s0001g13000.t01	Wine grape	cytosol	76.5	69.42
CDY11020	Canola	cytosol	33.26	69.12
Os01t0703600-01	Rice	plasma membrane	32.82	34.5
Os05t0543100-01	Rice	plasma membrane	31.93	33.49
Os02t0690700-01	Rice	plasma membrane	27.94	28.77
Os05t0383100-01	Rice	cytosol	25.28	27.34
Zm00001d002925_P002	Maize	plastid	77.83	25.0

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	EntrezGene:4343931	EMBL:AK059588	EMBL:AK099000
EMBL:AK119518	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	ProteinID:BAC79917.1	ProteinID:BAF22213.1	ProteinID:BAT02688.1
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	ProteinID:EEE67604.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030124	GO:GO:0030131
InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	EnsemblPlantsGene:Os07g0620300	EnsemblPlants:Os07t0620300-01	PFAM:PF00928
PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529
PANTHER:PTHR10529:SF270	UniProt:Q7XI39	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI00001B3A96	RefSeq:XP_015647045.1
SEG:seg	:	:	:	:	:

Description

Clathrin adaptor, mu subunit domain containing protein. (Os07t0620300-01);Clathrin adaptor, mu subunit domain containing protein. (Os07t0620300-02);Clathrin adaptor, mu subunit domain containing protein. (Os07t0620300-03)

Coordinates

chr7:+:25640851..25645803

Molecular Weight (calculated)

50649.7 Da

IEP (calculated)

6.649

GRAVY (calculated)

-0.172

Length

451 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDHIVFRDY RGEVPKGSAE IFFRKVKFWN DDEAEEAPPV FNVDGVNYIH VKVAGLFFVV TTMVNVSPSL LLELLQRIAR VTKDYLGVLN
101: EDSLRKNFIL VYELLDEVID FGYPQTTSTE VLKSYIFNEP IMVDAGRLPP LGPAAMFMQG TKRMPGTAVT KSVVATEPGG KKREEIFVDI IERISVTFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EDLSIGRTGS SSYDYRSSSG GGAVILDDCN FHESVHLDSF DIDRTLHLIP PDGEFAVMNY RITQEFKPPF
301: RVTALIEEAG PSRAEVLLKI RADFSANVTA NTIVVQMPVP SYTMRASFEL EAGAVGQTTD FKEGSRRIEW NLKKIVGGSE HTLRAKLTFS QESHGNLTKE
401: AGPVNMNFTI PMYNTSKLQV RYLQIAKKSK TYNPYRWVRY VTQANSYVAR L

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.