Factsheet for GSMUA_Achr6P10200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	82.34	86.25
KRH51806	Soybean	cytosol	70.17	76.36
Os07t0620300-01	Rice	plasma membrane	79.0	73.39
EER97557	Sorghum	cytosol, peroxisome, plastid	78.52	73.11
TraesCS2B01G191200.1	Wheat	golgi	77.8	72.28
CDY11020	Canola	cytosol	36.52	70.51
TraesCS2D01G172100.1	Wheat	peroxisome	74.46	69.18
KRH16840	Soybean	cytosol	74.46	69.03
AT4G24550.2	Thale cress	cytosol	73.99	68.74
Bra010489.1-P	Field mustard	cytosol	74.22	68.65
Solyc04g076230.2.1	Tomato	cytosol	73.99	68.58
PGSC0003DMT400024188	Potato	cytosol	73.99	68.58
CDY34290	Canola	cytosol	73.99	68.43
CDY03442	Canola	cytosol	73.75	68.21
CDY08937	Canola	cytosol	73.99	67.98
KRH61131	Soybean	cytosol, nucleus	71.84	67.95
CDY24840	Canola	cytosol	74.94	67.82
KRH72454	Soybean	cytosol	64.92	67.49
Bra013813.1-P	Field mustard	cytosol	71.12	66.82
VIT_18s0001g13000.t01	Wine grape	cytosol	76.61	64.59
CDX92642	Canola	cytosol	71.36	64.44
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	77.8	64.17
Bra019220.1-P	Field mustard	cytosol	66.11	59.96
GSMUA_Achr1P25430_001	Banana	cytosol, extracellular	30.31	29.67
GSMUA_Achr7P17600_001	Banana	cytosol	30.31	29.67
GSMUA_Achr2P06510_001	Banana	cytosol, endoplasmic reticulum	29.83	29.21
GSMUA_Achr4P28880_001	Banana	cytosol	28.88	27.63
GSMUA_Achr5P21080_001	Banana	cytosol	24.82	25.0
GSMUA_Achr2P12100_001	Banana	cytosol	28.88	20.34
Zm00001d002925_P002	Maize	plastid	65.87	19.66
GSMUA_Achr8P31910_001	Banana	cytosol	3.82	9.94

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
InterPro:Clathrin_mu_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
GO:GO:0030131	EnsemblPlantsGene:GSMUA_Achr6G10200_001	EnsemblPlants:GSMUA_Achr6P10200_001	EnsemblPlants:GSMUA_Achr6T10200_001	InterPro:IPR028565	InterPro:Longin-like_dom_sf
UniProt:M0T5R9	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00991	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356
TMHMM:TMhelix	UniParc:UPI0002950E9E	SEG:seg	:	:	:

Description

Putative AP-4 complex subunit mu [Source:GMGC_GENE;Acc:GSMUA_Achr6G10200_001]

Coordinates

chr6:+:6824007..6832954

Molecular Weight (calculated)

47094.4 Da

IEP (calculated)

5.107

GRAVY (calculated)

-0.068

Length

419 amino acids

Sequence
(BLAST)

001: MISQFFVLSQ RGDNIVFRDY RGEVPKGSAE IFFRKVKFWK EDEEEEAPPV FNVDGVNYIH VKVAGLFFVA TTRVNISPSL VLELLQRIAR VIKDYLGVLN
101: EDSLRKNFVL VYELLDEVID FGYPQTTSTE VLKSYIFNEP IEVDVARLPP LGPASMFMQG TKRMPGTAVT KSVVSTEPGG RKREEIFVDI IEKISVTFSS
201: SGYILTSEID GTIQMKSYLT GNPEIRLALN EDLSIGRGSA SVYDYRSSSG GAVILDDCNF HESVRLDSFD VDRTLTLIPP DGEFAVMNYR MTQEFKPPFR
301: VNALIEEAGQ LKAEVIIKVR ADFSASVTAN TITIQMPVPT HTARVSFELE SGAVGQTADF KEGAKRLEWC LKKAGFSSIS FSFYFFFLSL LWVGLNTHCV
401: QSSHFHRNHM ETSPEKLDL

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.