CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010489.1-P	Field mustard	cytosol	95.61	96.25
AT4G24550.2	Thale cress	cytosol	91.67	92.68
CDY24840	Canola	cytosol	92.32	90.93
CDY34290	Canola	cytosol	89.47	90.07
CDY03442	Canola	cytosol	89.25	89.85
CDX92642	Canola	cytosol	90.57	89.01
CDY11020	Canola	cytosol	38.6	81.11
Solyc04g076230.2.1	Tomato	cytosol	79.61	80.31
KRH16840	Soybean	cytosol	77.19	77.88
KRH72454	Soybean	cytosol	68.64	77.67
EER97557	Sorghum	cytosol, peroxisome, plastid	76.1	77.11
KRH61131	Soybean	cytosol, nucleus	74.34	76.52
TraesCS2B01G191200.1	Wheat	golgi	75.66	76.5
PGSC0003DMT400024188	Potato	cytosol	75.66	76.33
Os07t0620300-01	Rice	plasma membrane	74.34	75.17
KRH51806	Soybean	cytosol	63.16	74.81
GSMUA_Achr10P...	Banana	cytosol	65.57	74.75
GSMUA_Achr6P10200_001	Banana	cytosol	67.98	73.99
TraesCS2D01G172100.1	Wheat	peroxisome	72.59	73.39
VIT_18s0001g13000.t01	Wine grape	cytosol	74.56	68.41
HORVU2Hr1G030220.1	Barley	cytosol, mitochondrion, peroxisome, plastid	75.66	67.91
CDY46183	Canola	cytosol	29.17	31.07
CDY63681	Canola	cytosol	29.17	31.07
CDY54239	Canola	cytosol	28.95	30.84
CDY61312	Canola	cytosol	28.95	30.84
CDY19316	Canola	cytosol	28.95	30.84
CDX97909	Canola	cytosol	28.95	30.84
CDY63680	Canola	cytosol	28.73	30.25
CDY67244	Canola	cytosol	16.67	28.68
CDX87692	Canola	cytosol	25.66	26.71
CDY63050	Canola	cytosol	25.44	26.48
CDX77680	Canola	cytosol	25.44	26.48
CDY35171	Canola	cytosol	25.22	26.26
CDY03204	Canola	cytosol	25.22	26.26
CDX95277	Canola	cytosol	23.68	24.83
CDY41703	Canola	cytosol	23.68	23.95
Zm00001d002925_P002	Maize	plastid	65.35	21.23

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.5.2.2.3	Gene3D:3.30.450.60	GO:A0A078F763	UniProt:A0A078F763	InterPro:AP2_Mu_C_sf
InterPro:AP_mu_sigma_su	EnsemblPlants:CDY08937	ProteinID:CDY08937	ProteinID:CDY08937.1	InterPro:Clathrin_mu	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00000971001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314
PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF270	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EDF3D5

Description

BnaC08g11670DBnaC08g11670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F763]

Coordinates

chrLK031990:+:608294..611550

Molecular Weight (calculated)

51586.7 Da

IEP (calculated)

5.587

GRAVY (calculated)

-0.140

Length

456 amino acids

Sequence
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYVFNE PILIAPARLQ PIDPAAIFTQ GSKRMPGTAV TKSVVANDPS GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL FGNPEIRLAL NEDLNIGRGG ASVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDVVA NTITIQMPLP NYTSRASFEL ELGATGQKTD FKETSKMLEW SFKKASDELS LVWLLPFANC DLTFSQEFHG
401: NITKEAGPVS MTFTIPMYNV SKLQVKYLQI AKNSTSQNPY RWVRYVTQAN SYVARI

Best Arabidopsis Sequence Match ( AT4G24550.2 )
(BLAST)

001: MMISQFFVLS QRGDNIVFRD YRAEVPKGST ETFFRKVKFW KEDGNAEAPP IFNVDGVNYF HVKVVGLYFV ATTRVNVSPS LVLELLQRIA RVIKDYLGVL
101: NEDSFRKNFV LVYELLDEVI DFGYVQTTST EVLKSYIFNE PIVVSPARLQ PIDPAAIFTQ GAKRMPGTAV TKSVVANDPG GRRREEIFVD IIEKISVTFS
201: SSGYILTSEI DGTIQMKSYL SGNPEIRLAL NEDLNIGRGG RSVYDYRSSS GSGVILDDCN FHESVRLDSF DSDRTLSLVP PDGEFPVMNY RMTQEFKPPF
301: HVNTLIEEAG RLKAEVIIKI RAEFPSDIIA NTITVQMPLP NYTSRASFEL EPGAAGQRTD FKESNKMLEW NLKKIVGGGE HTLRAKLTFS QEFHGNITKE
401: AGPVSMTFTI PMYNVSKLQV KYLQIAKKSS SYNPYRWVRY VTQANSYVAR I

Arabidopsis Description

AP4MAP4M [Source:UniProtKB/TrEMBL;Acc:A0A178UX13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.