CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86984
CDY00194
CDY05915
CDY08119

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	CDX86984	AT3G49250.1	21798944
AT1G56590.1	CDY00194	AT3G49250.1	21798944
AT1G56590.1	CDY05915	AT3G49250.1	21798944
AT1G56590.1	CDY08119	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027924.1-P	Field mustard	cytosol	89.14	97.81
CDX95277	Canola	cytosol	90.24	93.56
AT1G56590.1	Thale cress	cytosol	85.37	92.77
Solyc01g100820.2.1	Tomato	cytosol	72.06	78.31
KRG96704	Soybean	cytosol	71.62	77.83
KRH33789	Soybean	cytosol	71.4	77.59
VIT_14s0060g00840.t01	Wine grape	cytosol	71.18	77.35
PGSC0003DMT400007122	Potato	cytosol	68.51	77.06
GSMUA_Achr5P21080_001	Banana	cytosol	69.4	75.24
KRH68423	Soybean	cytosol	72.73	75.06
EES06180	Sorghum	cytosol	64.08	69.3
Os05t0383100-01	Rice	cytosol	63.19	68.35
TraesCS1D01G240100.2	Wheat	cytosol	61.64	66.67
TraesCS1B01G252100.2	Wheat	cytosol	61.42	66.43
TraesCS1A01G240000.1	Wheat	cytosol	61.42	66.43
HORVU1Hr1G057140.1	Barley	cytosol	61.42	66.43
Zm00001d044264_P001	Maize	cytosol	43.24	65.22
Zm00001d054005_P006	Maize	cytosol	62.75	65.06
Zm00001d006386_P001	Maize	cytosol, plastid	35.03	54.11
Zm00001d002305_P001	Maize	mitochondrion	42.57	44.86
Zm00001d049311_P001	Maize	cytosol	21.06	42.04
Zm00001d021311_P001	Maize	plastid	18.85	36.64
Zm00001d032192_P001	Maize	extracellular, golgi	26.83	27.82
CDY61312	Canola	cytosol	24.61	25.93
CDY54239	Canola	cytosol	24.39	25.7
CDY19316	Canola	cytosol	24.39	25.7
CDX97909	Canola	cytosol	24.39	25.7
CDY63681	Canola	cytosol	24.17	25.47
CDY46183	Canola	cytosol	24.17	25.47
CDY63680	Canola	cytosol	23.95	24.94
CDY08937	Canola	cytosol	23.95	23.68
CDY34290	Canola	cytosol	23.73	23.62
CDY03442	Canola	cytosol	23.28	23.18
CDY24840	Canola	cytosol	23.73	23.11
CDX92642	Canola	cytosol	23.28	22.63
CDY11020	Canola	cytosol	10.64	22.12
CDY03204	Canola	cytosol	20.62	21.23
CDY63050	Canola	cytosol	20.62	21.23
CDY35171	Canola	cytosol	20.62	21.23
CDY67244	Canola	cytosol	12.42	21.13
CDX87692	Canola	cytosol	20.4	21.0
CDX77680	Canola	cytosol	20.4	21.0

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	GO:A0A078HY90	UniProt:A0A078HY90	InterPro:AP2_Mu_C_sf
EnsemblPlants:CDY41703	ProteinID:CDY41703	ProteinID:CDY41703.1	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00073409001	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990
PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI0004EED19A
SEG:seg	:	:	:	:	:

Description

BnaA09g15310DBnaA09g15310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HY90]

Coordinates

chrLK032504:+:47279..49514

Molecular Weight (calculated)

50678.0 Da

IEP (calculated)

5.114

GRAVY (calculated)

-0.138

Length

451 amino acids

Sequence
(BLAST)

001: MKAQSDELFV CFHVNGREEE QSSDSIREER EREREQYRSS MLQCIFLLSD SGEVMLEKQL TGHRVDRSIC AWFWDQADSF KSLPVIASPT HYLFQIVRDG
101: ITFLACTQVE MPPLMAIEFL CRVADVLSDY LGGLNEDLVK DNFIIVYELL DEMIDNGFPL TTEPNILREM IAPPNLVSKM LSVVTGNASN VSDTLPSGAG
201: SCVPWRPTDP KYSSNEVYVD LVEEMDAIVN RDGELVKCEI YGEVQMSSQL TGFPDLTLSF ANPSVLEDMR FHPCVRFRPW ESHQVLSFVP PDGQFKLMSY
301: RVKKLKNTPL YVKPQITSDS GTCRVSVLVG IRSDPGKTIE SITLSFQLPH CVSSADLSSN HGTVTILSNK TCTWTIGRIP SDKTPCLSGT LALETGLERL
401: HVYPTFKVGF KIMGIALSGL RIEKLDLKTI PPRLYKGFRA QTRSGEFDVR L

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.