Factsheet for Solyc01g100820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g071790.1.1
Solyc03g071800.1.1
Solyc03g071820.1.1
Solyc03g083170.2.1
Solyc03g083210.2.1
Solyc06g051990.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1
Solyc11g032150.1.1
Solyc11g032160.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT1G56590.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT1G56590.1	Solyc03g071790.1.1	AT3G49250.1	21798944
AT1G56590.1	Solyc03g071800.1.1	AT3G49250.1	21798944
AT1G56590.1	Solyc03g071820.1.1	AT3G49250.1	21798944
AT1G56590.1	Solyc03g083170.2.1	AT3G49250.1	21798944
AT1G56590.1	Solyc03g083210.2.1	AT3G49250.1	21798944
AT1G56590.1	Solyc06g051990.2.1	AT3G49250.1	21798944
AT1G56590.1	Solyc11g032150.1.1	AT3G49250.1	21798944
AT1G56590.1	Solyc11g032160.1.1	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007122	Potato	cytosol	94.7	98.0
VIT_14s0060g00840.t01	Wine grape	cytosol	82.89	82.89
KRG96704	Soybean	cytosol	82.89	82.89
Bra027924.1-P	Field mustard	cytosol	79.28	80.05
AT1G56590.1	Thale cress	cytosol	80.0	80.0
KRH33789	Soybean	cytosol	79.04	79.04
KRH68423	Soybean	cytosol	82.65	78.49
GSMUA_Achr5P21080_001	Banana	cytosol	78.31	78.12
CDX95277	Canola	cytosol	78.8	75.17
CDY41703	Canola	cytosol	78.31	72.06
EES06180	Sorghum	cytosol	71.33	70.98
Os05t0383100-01	Rice	cytosol	71.08	70.74
TraesCS1D01G240100.2	Wheat	cytosol	70.84	70.5
TraesCS1B01G252100.2	Wheat	cytosol	70.84	70.5
HORVU1Hr1G057140.1	Barley	cytosol	70.6	70.26
TraesCS1A01G240000.1	Wheat	cytosol	70.6	70.26
Zm00001d044264_P001	Maize	cytosol	49.16	68.23
Zm00001d054005_P006	Maize	cytosol	70.36	67.13
Zm00001d006386_P001	Maize	cytosol, plastid	39.52	56.16
Zm00001d002305_P001	Maize	mitochondrion	47.71	46.26
Zm00001d049311_P001	Maize	cytosol	23.86	43.81
Zm00001d021311_P001	Maize	plastid	21.69	38.79
Zm00001d032192_P001	Maize	extracellular, golgi	28.67	27.36
Solyc04g026360.2.1	Tomato	nucleus	14.46	26.43
Solyc04g076230.2.1	Tomato	cytosol	27.23	25.0
Solyc06g071650.1.1	Tomato	cytosol, plastid	24.58	24.52
Solyc05g013340.2.1	Tomato	plastid	24.82	24.18
Solyc06g061150.2.1	Tomato	nucleus	22.89	21.64
Solyc08g006960.2.1	Tomato	cytosol, extracellular	22.65	21.46
Solyc04g026380.2.1	Tomato	cytosol	11.81	20.85

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	UniProt:K4B1B3	InterPro:Longin-like_dom_sf
InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc01g100820.2	EnsemblPlants:Solyc01g100820.2.1
UniParc:UPI00027678B0	:	:	:	:	:

Description

AP-3 complex subunit mu [Source:Projected from Arabidopsis thaliana (AT1G56590) UniProtKB/Swiss-Prot;Acc:F4I562]

Coordinates

chr1:-:90745120..90751027

Molecular Weight (calculated)

46397.3 Da

IEP (calculated)

6.400

GRAVY (calculated)

-0.019

Length

415 amino acids

Sequence
(BLAST)

001: MLQCIFLLSD SGEVMLEKQL TGHWVDRAIC SWFWDQSIAQ GDSFKHLPVI ASPTHYLFQV NREGVTFLAC TQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFVIV YELLDEMIDN GFPLTTEPNI LREMIAPPNI VSKVLSVVTG NTSNMSNTLP GATGSCVPWR KTDLKHSSNE IYVDLVEEMD ATINRDGVLV
201: KCEIYGEVQV NSHLSGLPDL TLSFANTSIL NDVRFHPCVR LRPWESNQIL SFVPPDGQFK LMSYRIKKLK STPIYVKPQI TSDSGTCRIS LLVGIRNDPG
301: KAIDDINVQF QLPPRVLSAD LTSNYGTVNI LSNKTCTWSI GRMPKDKTPS MTGTLVLETG VERLHVFPTF LVGFKILGVA LSGLKIEKLD FKNLPTRPYK
401: GFRALTRSGQ YEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.