CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH53504
KRH61926
KRH64437

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	KRH52586	AT1G71230.1	21798944
AT1G56590.1	KRH61926	AT1G71230.1	21798944
AT1G56590.1	KRH53504	AT3G49250.1	21798944
AT1G56590.1	KRH64437	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96704	Soybean	cytosol	91.99	96.87
KRH33789	Soybean	cytosol	82.38	86.75
VIT_14s0060g00840.t01	Wine grape	cytosol	80.09	84.34
Solyc01g100820.2.1	Tomato	cytosol	78.49	82.65
PGSC0003DMT400007122	Potato	cytosol	75.51	82.29
Bra027924.1-P	Field mustard	cytosol	75.97	80.78
AT1G56590.1	Thale cress	cytosol	76.43	80.48
GSMUA_Achr5P21080_001	Banana	cytosol	75.29	79.09
CDX95277	Canola	cytosol	76.43	76.78
CDY41703	Canola	cytosol	75.06	72.73
EES06180	Sorghum	cytosol	67.73	70.98
Os05t0383100-01	Rice	cytosol	67.51	70.74
TraesCS1D01G240100.2	Wheat	cytosol	67.51	70.74
TraesCS1B01G252100.2	Wheat	cytosol	67.28	70.5
TraesCS1A01G240000.1	Wheat	cytosol	67.28	70.5
HORVU1Hr1G057140.1	Barley	cytosol	67.28	70.5
Zm00001d044264_P001	Maize	cytosol	47.83	69.9
Zm00001d054005_P006	Maize	cytosol	67.73	68.05
Zm00001d006386_P001	Maize	cytosol, plastid	37.3	55.82
Zm00001d002305_P001	Maize	mitochondrion	45.77	46.73
Zm00001d049311_P001	Maize	cytosol	23.11	44.69
Zm00001d021311_P001	Maize	plastid	20.37	38.36
Zm00001d032192_P001	Maize	extracellular, golgi	27.46	27.59
KRH16840	Soybean	cytosol	25.63	24.78
KRH61131	Soybean	cytosol, nucleus	24.71	24.38
KRG99414	Soybean	cytosol	23.57	24.07
KRH45615	Soybean	cytosol	23.57	24.07
KRH51806	Soybean	cytosol	21.05	23.9
KRH74545	Soybean	endoplasmic reticulum	23.34	23.83
KRH69617	Soybean	cytosol	23.34	23.83
KRH72454	Soybean	cytosol	21.74	23.57
KRH28283	Soybean	cytosol, golgi	21.97	21.92
KRH77207	Soybean	cytosol, extracellular	21.28	21.23
KRH58201	Soybean	mitochondrion	21.05	21.0
KRH04335	Soybean	endoplasmic reticulum	21.05	21.0

Protein Annotations

EntrezGene:100791605	Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	EMBL:ACUP02002115	InterPro:AP2_Mu_C_sf
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlantsGene:GLYMA_03G230200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	UniProt:K7KGJ8	EnsemblPlants:KRH68423	ProteinID:KRH68423
ProteinID:KRH68423.1	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI00029608E2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:43198527..43201813

Molecular Weight (calculated)

48991.3 Da

IEP (calculated)

6.078

GRAVY (calculated)

-0.029

Length

437 amino acids

Sequence
(BLAST)

001: MISGVSRTRK LSFDLERQRE RKMLQCIFLL SDSGEVMLEK QLSGHRVDRS ICAWFWDQAI SQPDSFKQQP VIASPTHYLF QVFREGITFL ACTQVEMPPL
101: MAIEFLCRVA DVLNDYLGGL NEDLIKDNFI IVYELLDEMI DNGFPLTTEP NILQEMIAPP NIVSKVLSVV TGSSSNVSDT LPGATASLVP WRTADTKYAN
201: NEVYVDLVEE MDATINRDGV LVKCEINGEV QVNSHITGLP DLTLSFANPS ILDDVRFHPC VRYRPWESNQ ILSFVPPDGR FKLMSYRVGK LKNTPIYVKP
301: QFTSDGGRCR VSVLVGIRND PGKTIDNVTV QFQLPSCILS ADLSSNYGIV NILANKICSW SIGRIPKDKA PSMSGTLVLE TGLERLHVFP TFQVGFRIMG
401: VALSGLQIDK LDLKTVPYRF YKGFRALTRA GEFEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.