Factsheet for Zm00001d049311_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044264_P001	Maize	cytosol	53.54	40.47
Zm00001d054005_P006	Maize	cytosol	59.73	31.03
EES06180	Sorghum	cytosol	57.08	30.94
Os05t0383100-01	Rice	cytosol	54.87	29.74
TraesCS1B01G252100.2	Wheat	cytosol	54.42	29.5
HORVU1Hr1G057140.1	Barley	cytosol	53.98	29.26
TraesCS1D01G240100.2	Wheat	cytosol	53.98	29.26
TraesCS1A01G240000.1	Wheat	cytosol	53.98	29.26
Zm00001d002305_P001	Maize	mitochondrion	50.0	26.4
VIT_14s0060g00840.t01	Wine grape	cytosol	47.35	25.78
KRG96704	Soybean	cytosol	46.02	25.06
GSMUA_Achr5P21080_001	Banana	cytosol	45.58	24.76
PGSC0003DMT400007122	Potato	cytosol	43.81	24.69
KRH33789	Soybean	cytosol	44.69	24.34
Solyc01g100820.2.1	Tomato	cytosol	43.81	23.86
Bra027924.1-P	Field mustard	cytosol	42.92	23.6
KRH68423	Soybean	cytosol	44.69	23.11
CDX95277	Canola	cytosol	43.36	22.53
AT1G56590.1	Thale cress	cytosol	40.71	22.17
CDY41703	Canola	cytosol	42.04	21.06
Zm00001d021311_P001	Maize	plastid	21.24	20.69
Zm00001d052338_P001	Maize	cytosol	4.87	18.64
Zm00001d006386_P001	Maize	cytosol, plastid	19.47	15.07
Zm00001d036168_P001	Maize	mitochondrion	13.27	12.35
Zm00001d011676_P001	Maize	extracellular, plasma membrane	21.68	11.42
Zm00001d043726_P001	Maize	cytosol	21.24	11.19
Zm00001d032192_P001	Maize	extracellular, golgi	14.6	7.59
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	16.81	7.28
Zm00001d002925_P002	Maize	plastid	18.14	2.92

Protein Annotations

EnsemblPlants:Zm00001d049311_P001	EnsemblPlants:Zm00001d049311_T001	EnsemblPlantsGene:Zm00001d049311	Gene3D:2.60.40.1170	InterPro:AP2_Mu_C_sf	InterPro:IPR028565
InterPro:MHD	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	PFAM:PF00928	ProteinID:AQK50026.1	SUPFAM:SSF49447
UniParc:UPI000220E624	UniProt:K7TSK4	MapMan:35.1	:	:	:

Description

AP-3 complex subunit mu

Coordinates

chr4:-:25828172..25831414

Molecular Weight (calculated)

24975.9 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.304

Length

226 amino acids

Sequence
(BLAST)

001: MGPPSDFDPA KTHDVPVRVK NSYNPKALGT LITRQRDMDK HSAQVKCHYV GHFEHSDAWS VWFSWQGTDG ILGAKDQGTV TSKERPRLLL QGAVQRPWES
101: NQILSFVPPD GQFKLMSYSA VPVAPLIVSV DLTANYGTVD ILADKTCLWT IGQIPKDKAP ALSGNLRLEE GLAQLHALPT FQVKFRIMGV ALFGLQIDKL
201: DVKNTSNAPY KGFRAQAQAG NYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.