Factsheet for TraesCS1A01G240000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS3A01G158200.1
TraesCS3B01G185200.1
TraesCS3D01G165900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT1G56590.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT1G56590.1	TraesCS3A01G158200.1	AT3G49250.1	21798944
AT1G56590.1	TraesCS3B01G185200.1	AT3G49250.1	21798944
AT1G56590.1	TraesCS3D01G165900.1	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G240100.2	Wheat	cytosol	99.52	99.52
TraesCS1B01G252100.2	Wheat	cytosol	99.52	99.52
HORVU1Hr1G057140.1	Barley	cytosol	98.8	98.8
Os05t0383100-01	Rice	cytosol	88.01	88.01
EES06180	Sorghum	cytosol	87.77	87.77
Zm00001d044264_P001	Maize	cytosol	60.43	84.28
Zm00001d054005_P006	Maize	cytosol	85.61	82.07
GSMUA_Achr5P21080_001	Banana	cytosol	74.34	74.52
VIT_14s0060g00840.t01	Wine grape	cytosol	72.66	73.01
KRG96704	Soybean	cytosol	70.74	71.08
Solyc01g100820.2.1	Tomato	cytosol	70.26	70.6
KRH33789	Soybean	cytosol	70.02	70.36
PGSC0003DMT400007122	Potato	cytosol	67.39	70.07
Bra027924.1-P	Field mustard	cytosol	67.15	68.13
KRH68423	Soybean	cytosol	70.5	67.28
AT1G56590.1	Thale cress	cytosol	66.67	66.99
Zm00001d006386_P001	Maize	cytosol, plastid	45.8	65.41
CDX95277	Canola	cytosol	66.91	64.14
CDY41703	Canola	cytosol	66.43	61.42
Zm00001d002305_P001	Maize	mitochondrion	57.07	55.61
Zm00001d049311_P001	Maize	cytosol	29.26	53.98
Zm00001d021311_P001	Maize	plastid	23.5	42.24
Zm00001d032192_P001	Maize	extracellular, golgi	34.53	33.1
TraesCS2A01G165000.1	Wheat	endoplasmic reticulum, plasma membrane	2.4	27.78
TraesCS1A01G365600.1	Wheat	golgi	25.9	25.17
TraesCS3A01G254200.2	Wheat	cytosol	25.18	24.48
TraesCS6A01G263800.1	Wheat	extracellular	22.54	21.46

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:AP_mu_sigma_su	InterPro:Clathrin_mu
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928
PFAM:PF01217	PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2
SUPFAM:SSF49447	SUPFAM:SSF64356	EnsemblPlantsGene:TraesCS1A01G240000	EnsemblPlants:TraesCS1A01G240000.1	TIGR:cd09252	:

Description

No Description!

Coordinates

chr1A:-:426930008..426933652

Molecular Weight (calculated)

46273.1 Da

IEP (calculated)

6.052

GRAVY (calculated)

0.035

Length

417 amino acids

Sequence
(BLAST)

001: MLQCVFLLSD SGEVMVEKQM TAHRVDRAIC GWFWEYVLAH AAGDPSKVLQ VVVSPTHYLF QVYRSGVTFL ACTQVEMPPL MAIEFLSRVA DVLTDYLGDI
101: NEDTIKDNFV IVYQILDEMM DNGFPLTTEP NILKELVAQP NMVSKMLNVM TGKSSTIGSK LPDATASFVP WRTTIVKDAS NEVYVNIVEE LDACVNREGV
201: LVKCEACGEI EVNSSLPGLP ELTLSFANPT IINDVRFHPC VRFRPWEANQ ILSFVPPDGQ FKLMSYRVKK LKTTPIYVKP QLSSDSGNCR VHVMVGIRND
301: PGKPIDSIIV QFQLPPLIAS ADLTANHGTV DILADQTCVW TIGHIPKDKA PSLSGNLRLE EGLAHLHAFP IFQVKFRIMG AALSGLQIDK LDVKNTPSAP
401: YKGFRAQTQA GRYEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.