Factsheet for PGSC0003DMT400007122

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400023896
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	PGSC0003DMT400023896	AT1G71230.1	21798944
AT1G56590.1	PGSC0003DMT400069203	AT1G71230.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100820.2.1	Tomato	cytosol	98.0	94.7
KRG96704	Soybean	cytosol	82.54	79.76
VIT_14s0060g00840.t01	Wine grape	cytosol	82.29	79.52
AT1G56590.1	Thale cress	cytosol	79.05	76.39
Bra027924.1-P	Field mustard	cytosol	78.05	76.16
KRH33789	Soybean	cytosol	78.55	75.9
KRH68423	Soybean	cytosol	82.29	75.51
GSMUA_Achr5P21080_001	Banana	cytosol	77.81	75.0
CDX95277	Canola	cytosol	77.56	71.49
CDY41703	Canola	cytosol	77.06	68.51
Zm00001d044264_P001	Maize	cytosol	50.87	68.23
Os05t0383100-01	Rice	cytosol	70.32	67.63
EES06180	Sorghum	cytosol	70.32	67.63
TraesCS1D01G240100.2	Wheat	cytosol	70.32	67.63
TraesCS1B01G252100.2	Wheat	cytosol	70.32	67.63
HORVU1Hr1G057140.1	Barley	cytosol	70.07	67.39
TraesCS1A01G240000.1	Wheat	cytosol	70.07	67.39
Zm00001d054005_P006	Maize	cytosol	69.33	63.91
Zm00001d006386_P001	Maize	cytosol, plastid	40.65	55.82
Zm00001d002305_P001	Maize	mitochondrion	48.88	45.79
Zm00001d049311_P001	Maize	cytosol	24.69	43.81
Zm00001d021311_P001	Maize	plastid	22.44	38.79
Zm00001d032192_P001	Maize	extracellular, golgi	29.18	26.9
PGSC0003DMT400024188	Potato	cytosol	26.18	23.23
PGSC0003DMT400052825	Potato	cytosol, extracellular	22.44	20.55
PGSC0003DMT400002906	Potato	mitochondrion	11.22	20.45
PGSC0003DMT400069426	Potato	cytosol	4.99	15.04

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009605	GO:GO:0009606	GO:GO:0009628	GO:GO:0009630	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	UniProt:M0ZSH4
InterPro:MHD	PFAM:PF00928	EnsemblPlantsGene:PGSC0003DMG400002755	PGSC:PGSC0003DMG400002755	EnsemblPlants:PGSC0003DMT400007122	PIRSF:PIRSF005992
PRINTS:PR00314	ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI000296A266	:	:	:	:

Description

Clathrin-associated adaptor complexes medium subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400002755]

Coordinates

chr1:-:78437783..78444099

Molecular Weight (calculated)

44834.4 Da

IEP (calculated)

6.850

GRAVY (calculated)

-0.058

Length

401 amino acids

Sequence
(BLAST)

001: MLEKQLTGHW VDRAICSWFW DQSIAQGDSF KHLPVIASPT HYLFQVNREG VTFLACTQVE MPPLMAIEFL CRVADVLSEY LGGLNEDLIK DNFVIVYELL
101: DEMIDNGFPL TTEPNILREM IAPPNIISKV LSVVTGNTSN MSNTLPGATG SCVPWRKTDL KHSSNEVYVD LVEEMDATIN RDGVLVKCEI CGEVQVNSHL
201: SGLPDLTLSF ANTSILNDVR FHPCVRLRPW ESNQILSFVP PDGQFKLMSY RIKKLKSTPI YVKPQITSDS GTCRISLLVG IRNDPGKTID DINVQFQLPP
301: RVLSADLTSN YGTVNILSNK TCSWSIGRMP KDKTPSMTGT LVLETGVERL HVFPTFLVGF KIMGVALSGL KIEKLDFKNL PTRPYKGFRA LTRSGQYEVR
401: S

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.