Factsheet for Zm00001d054005_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044264_P001	Maize	cytosol	66.44	96.66
EES06180	Sorghum	cytosol	90.34	94.24
Os05t0383100-01	Rice	cytosol	83.22	86.81
TraesCS1D01G240100.2	Wheat	cytosol	82.07	85.61
TraesCS1A01G240000.1	Wheat	cytosol	82.07	85.61
TraesCS1B01G252100.2	Wheat	cytosol	82.07	85.61
HORVU1Hr1G057140.1	Barley	cytosol	81.84	85.37
GSMUA_Achr5P21080_001	Banana	cytosol	70.11	73.32
Zm00001d006386_P001	Maize	cytosol, plastid	49.2	73.29
VIT_14s0060g00840.t01	Wine grape	cytosol	69.2	72.53
KRG96704	Soybean	cytosol	68.28	71.57
KRH33789	Soybean	cytosol	67.13	70.36
Solyc01g100820.2.1	Tomato	cytosol	67.13	70.36
PGSC0003DMT400007122	Potato	cytosol	63.91	69.33
Bra027924.1-P	Field mustard	cytosol	65.29	69.1
KRH68423	Soybean	cytosol	68.05	67.73
AT1G56590.1	Thale cress	cytosol	64.37	67.47
CDX95277	Canola	cytosol	64.83	64.83
Zm00001d002305_P001	Maize	mitochondrion	62.3	63.32
CDY41703	Canola	cytosol	65.06	62.75
Zm00001d049311_P001	Maize	cytosol	31.03	59.73
Zm00001d021311_P001	Maize	plastid	25.06	46.98
Zm00001d032192_P001	Maize	extracellular, golgi	37.47	37.47
Zm00001d011676_P001	Maize	extracellular, plasma membrane	24.37	24.71
Zm00001d043726_P001	Maize	cytosol	24.14	24.48
Zm00001d052338_P001	Maize	cytosol	2.99	22.03
Zm00001d036168_P001	Maize	mitochondrion	9.89	17.7
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	20.46	17.05
Zm00001d002925_P002	Maize	plastid	22.53	6.98

Protein Annotations

EntrezGene:100273129	EntrezGene:103654969	Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	UniProt:A0A1D6QUI4
InterPro:AP2_Mu_C_sf	ProteinID:AQK61040.1	InterPro:Clathrin_mu	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928
PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072	PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447
SUPFAM:SSF64356	UniParc:UPI000843CD42	EnsemblPlantsGene:Zm00001d054005	EnsemblPlants:Zm00001d054005_P006	EnsemblPlants:Zm00001d054005_T006	:

Description

AP-3 complex subunit mu

Coordinates

chr4:+:245035200..245044871

Molecular Weight (calculated)

48211.6 Da

IEP (calculated)

6.065

GRAVY (calculated)

0.047

Length

435 amino acids

Sequence
(BLAST)

001: MLQCIFLLSD SGEVMVEKQM AAHCVDRAIC AWFWDYVVAH AAGDPSKVKP PALTNFGLFL RDAKQVLQVV VSPTHYLFQI YRNGVTFLAC TQVEMAPLMA
101: VEFLSRVADV LTDYLGDLNE DIIKDNFVIV YQILDEMMDN GFPLTTEPNI LKEMITPPNI VNKMLNVVTG KSSTLGSKLP DAAASFVPWR RTTVKDASNE
201: VYVNIVEELD ACVNREGVLV KCEAYGEVQV NCSLPGVPEL TMSFANPAII NDVTFHPCVR FRPWESNQIL SFVPPDGQFK LMSYRVQKLK KTPIYVKPQL
301: TSDSGNCRVS VMVGIRNDPG KPIDSITVQF QLPPLIVSAD LTANYGTVDI LADKTCLWTI GQIPKDKAPA LSGNLRLEEG LAQLHALPTF QVKFRIMGVA
401: LSGLQIDKLD VKNTPNAPYK GFRAQTQAGK YEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.