Factsheet for Zm00001d021311_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome, plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044264_P001	Maize	cytosol	46.12	35.79
Zm00001d006386_P001	Maize	cytosol, plastid	41.38	32.88
EES06180	Sorghum	cytosol	45.26	25.18
Zm00001d054005_P006	Maize	cytosol	46.98	25.06
HORVU1Hr1G057140.1	Barley	cytosol	42.67	23.74
Os05t0383100-01	Rice	cytosol	42.67	23.74
TraesCS1B01G252100.2	Wheat	cytosol	42.24	23.5
TraesCS1D01G240100.2	Wheat	cytosol	42.24	23.5
TraesCS1A01G240000.1	Wheat	cytosol	42.24	23.5
KRH33789	Soybean	cytosol	40.52	22.65
PGSC0003DMT400007122	Potato	cytosol	38.79	22.44
Solyc01g100820.2.1	Tomato	cytosol	38.79	21.69
KRG96704	Soybean	cytosol	38.36	21.45
GSMUA_Achr5P21080_001	Banana	cytosol	38.36	21.39
Zm00001d049311_P001	Maize	cytosol	20.69	21.24
VIT_14s0060g00840.t01	Wine grape	cytosol	37.93	21.2
Bra027924.1-P	Field mustard	cytosol	36.64	20.68
KRH68423	Soybean	cytosol	38.36	20.37
AT1G56590.1	Thale cress	cytosol	35.34	19.76
CDX95277	Canola	cytosol	36.64	19.54
CDY41703	Canola	cytosol	36.64	18.85
Zm00001d002305_P001	Maize	mitochondrion	34.48	18.69
Zm00001d032192_P001	Maize	extracellular, golgi	33.19	17.7
Zm00001d052338_P001	Maize	cytosol	3.45	13.56
Zm00001d036168_P001	Maize	mitochondrion	13.79	13.17
Zm00001d011676_P001	Maize	extracellular, plasma membrane	14.22	7.69
Zm00001d043726_P001	Maize	cytosol	13.79	7.46
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	13.36	5.94
Zm00001d002925_P002	Maize	plastid	13.79	2.28

Protein Annotations

Gene3D:2.60.40.1170	Gene3D:3.90.1150.10	MapMan:35.1	UniProt:A0A1D6I9Z4	InterPro:AP2_Mu_C_sf	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
InterPro:IPR015422	InterPro:IPR028565	InterPro:MHD	ProteinID:ONM56815.1	PFAM:PF00928	PFscan:PS51072
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	InterPro:PyrdxlP-dep_Trfase_dom1	SUPFAM:SSF49447	UniParc:UPI0008455A7C	EnsemblPlantsGene:Zm00001d021311
EnsemblPlants:Zm00001d021311_P001	EnsemblPlants:Zm00001d021311_T001	SEG:seg	:	:	:

Description

AP-3 complex subunit mu

Coordinates

chr7:-:148466088..148467442

Molecular Weight (calculated)

24936.1 Da

IEP (calculated)

8.842

GRAVY (calculated)

0.086

Length

232 amino acids

Sequence
(BLAST)

001: MSFANPAIIN DVTFHPCVRF RPWESNQILS FVPPNGQFKL TSYRVQKLKK TPIYVKPQLT SDSRNCHVSV MVGIRNDPGK PIDSITRQFQ LPPLIVSADL
101: TANYGTVDIL ADKVSLLPTI SSTVTPLIPD LVTGQGKGPG MHLVSDEVYA STALADPGFV SVLEVAAAAA REDANAGSLA ERVHVVEPGW FRVCFANVSA
201: KTLDVALQRL ADFAEAKATR GPARRLLAAA GV

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.