Factsheet for Zm00001d032192_P001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006386_P001	Maize	cytosol, plastid	31.95	47.6
Zm00001d002305_P001	Maize	mitochondrion	44.6	45.33
Zm00001d044264_P001	Maize	cytosol	31.03	45.15
EES06180	Sorghum	cytosol	36.78	38.37
Zm00001d054005_P006	Maize	cytosol	37.47	37.47
Os05t0383100-01	Rice	cytosol	33.79	35.25
TraesCS1B01G252100.2	Wheat	cytosol	33.1	34.53
TraesCS1D01G240100.2	Wheat	cytosol	33.1	34.53
TraesCS1A01G240000.1	Wheat	cytosol	33.1	34.53
HORVU1Hr1G057140.1	Barley	cytosol	33.1	34.53
Zm00001d021311_P001	Maize	plastid	17.7	33.19
GSMUA_Achr5P21080_001	Banana	cytosol	28.97	30.29
PGSC0003DMT400007122	Potato	cytosol	26.9	29.18
Bra027924.1-P	Field mustard	cytosol	27.13	28.71
KRH33789	Soybean	cytosol	27.36	28.67
KRG96704	Soybean	cytosol	27.36	28.67
Solyc01g100820.2.1	Tomato	cytosol	27.36	28.67
AT1G56590.1	Thale cress	cytosol	26.9	28.19
VIT_14s0060g00840.t01	Wine grape	cytosol	26.67	27.95
KRH68423	Soybean	cytosol	27.59	27.46
CDX95277	Canola	cytosol	26.9	26.9
CDY41703	Canola	cytosol	27.82	26.83
Zm00001d049311_P001	Maize	cytosol	7.59	14.6
Zm00001d011676_P001	Maize	extracellular, plasma membrane	14.25	14.45
Zm00001d043726_P001	Maize	cytosol	14.02	14.22
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	12.87	10.73
Zm00001d036168_P001	Maize	mitochondrion	3.22	5.76
Zm00001d052338_P001	Maize	cytosol	0.69	5.08
Zm00001d002925_P002	Maize	plastid	13.79	4.27

Protein Annotations

Gene3D:2.60.40.1170	Gene3D:3.30.450.60	MapMan:35.1	UniProt:A0A1D6KP27	InterPro:AP2_Mu_C_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Longin-like_dom_sf	ProteinID:ONM04559.1
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF117281	SUPFAM:SSF49447	SUPFAM:SSF64356	TMHMM:TMhelix
UniParc:UPI0008428CDC	EnsemblPlantsGene:Zm00001d032192	EnsemblPlants:Zm00001d032192_P001	EnsemblPlants:Zm00001d032192_T001	SEG:seg	:

Description

AP-3 complex subunit mu

Coordinates

chr1:+:216390881..216396455

Molecular Weight (calculated)

47407.6 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.054

Length

435 amino acids

Sequence
(BLAST)

001: MEEEVESSSA VALLLVLVAL VVVPSMALLV TSCWRPPSPR AAHAAAAVGT MVVFHVLGTW DLQIPFPRQL FSVAIYKMAT QGGIGPAGHS IDDLYVLDLT
101: NDKFKWHMVV VQGAGPGPRY GHCMDLAAQR YLVTVSGNDA HDVPVRVKNS YNPKAPGTLI TRQRDMDKVV LTSIVLKSNV NMLDILSTRM LGQYGFPGKG
201: MLNTEPFLTD GILGAKEQRT ITSKERPMLL LQGAILDEMM DNGFPLTTEP NILKEMITPP NIVNKMLNVV TSKSSTLGSK LPDAAASFVP WRRTTVKDAS
301: NEVYVNIVEE LDACVNSTLT FDQTSNVQKL KKTPIYVKPQ LTSDSGNCRV SVMVGIRNDR GKPIDSITVQ FQLPPLIVSV DLTANYGTVD ILADKVSVLP
401: TISSTVTPLI PDLVTSQDLF VDNWADTKRQ STNTL

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.