Factsheet for Zm00001d006386_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d013511_P001
Zm00001d050870_P001
Zm00001d053353_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G56590.1	Zm00001d013511_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d050870_P001	AT3G49250.1	21798944
AT1G56590.1	Zm00001d053353_P001	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044264_P001	Maize	cytosol	69.52	67.89
EES06180	Sorghum	cytosol	71.23	49.88
Zm00001d054005_P006	Maize	cytosol	73.29	49.2
Os05t0383100-01	Rice	cytosol	67.81	47.48
TraesCS1D01G240100.2	Wheat	cytosol	65.75	46.04
TraesCS1B01G252100.2	Wheat	cytosol	65.41	45.8
TraesCS1A01G240000.1	Wheat	cytosol	65.41	45.8
HORVU1Hr1G057140.1	Barley	cytosol	65.41	45.8
Zm00001d002305_P001	Maize	mitochondrion	64.73	44.16
Zm00001d021311_P001	Maize	plastid	32.88	41.38
PGSC0003DMT400007122	Potato	cytosol	55.82	40.65
KRH33789	Soybean	cytosol	56.85	40.0
GSMUA_Achr5P21080_001	Banana	cytosol	56.85	39.9
Solyc01g100820.2.1	Tomato	cytosol	56.16	39.52
VIT_14s0060g00840.t01	Wine grape	cytosol	55.82	39.28
KRG96704	Soybean	cytosol	55.48	39.04
Bra027924.1-P	Field mustard	cytosol	53.77	38.2
AT1G56590.1	Thale cress	cytosol	53.77	37.83
KRH68423	Soybean	cytosol	55.82	37.3
CDX95277	Canola	cytosol	53.08	35.63
CDY41703	Canola	cytosol	54.11	35.03
Zm00001d032192_P001	Maize	extracellular, golgi	47.6	31.95
Zm00001d049311_P001	Maize	cytosol	15.07	19.47
Zm00001d011676_P001	Maize	extracellular, plasma membrane	22.95	15.62
Zm00001d043726_P001	Maize	cytosol	22.95	15.62
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	23.63	13.22
Zm00001d036168_P001	Maize	mitochondrion	10.96	13.17
Zm00001d052338_P001	Maize	cytosol	2.05	10.17
Zm00001d002925_P002	Maize	plastid	22.26	4.63

Protein Annotations

Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	UniProt:A0A1D6EVT1	InterPro:AP2_Mu_C_sf	InterPro:Clathrin_mu
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030131	InterPro:IPR028565
InterPro:Longin-like_dom_sf	InterPro:MHD	ProteinID:ONM23677.1	PFAM:PF00928	PRINTS:PR00314	PFscan:PS51072
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000844B651	EnsemblPlantsGene:Zm00001d006386
EnsemblPlants:Zm00001d006386_P001	EnsemblPlants:Zm00001d006386_T001	:	:	:	:

Description

AP-3 complex subunit mu

Coordinates

chr2:+:206340126..206342990

Molecular Weight (calculated)

32778.9 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.284

Length

292 amino acids

Sequence
(BLAST)

001: MDKVCSRTDG ILGAKDQRTV TSKERPRLLL QGAILDEMMD NGFTLTTEPN ILKEMITPPN IVNKMLNVVT GKSSTLGSKL PDAAASFVPW RRTTVKDASN
101: EVYVNIVEEL DACVNREGVL VKCEAYGEVQ VNCSLPGVPE LTMSFANTAI INDVTFHPCV RFRPWESNQI LSFVPPDGQF KLMSYRVQKL KKTPIYVKPQ
201: LTSDSGNCRV SVMVGIRNDP GKPIDSITVQ FQLPPLIISA DLTQTMARLT SLPTRPICGQ LGRYQKTKHR HSLEIYDWRK GSHNCMHCRH FR

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.