CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH52586
KRH53504
KRH61926
KRH64437

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56590.1	KRH52586	AT1G71230.1	21798944
AT1G56590.1	KRH61926	AT1G71230.1	21798944
AT1G56590.1	KRH53504	AT3G49250.1	21798944
AT1G56590.1	KRH64437	AT3G49250.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96704	Soybean	cytosol	86.75	86.75
VIT_14s0060g00840.t01	Wine grape	cytosol	82.65	82.65
KRH68423	Soybean	cytosol	86.75	82.38
Bra027924.1-P	Field mustard	cytosol	78.8	79.56
AT1G56590.1	Thale cress	cytosol	79.04	79.04
Solyc01g100820.2.1	Tomato	cytosol	79.04	79.04
PGSC0003DMT400007122	Potato	cytosol	75.9	78.55
GSMUA_Achr5P21080_001	Banana	cytosol	77.59	77.4
CDX95277	Canola	cytosol	78.31	74.71
CDY41703	Canola	cytosol	77.59	71.4
EES06180	Sorghum	cytosol	71.08	70.74
Os05t0383100-01	Rice	cytosol	70.6	70.26
TraesCS1D01G240100.2	Wheat	cytosol	70.6	70.26
Zm00001d044264_P001	Maize	cytosol	50.6	70.23
TraesCS1B01G252100.2	Wheat	cytosol	70.36	70.02
TraesCS1A01G240000.1	Wheat	cytosol	70.36	70.02
HORVU1Hr1G057140.1	Barley	cytosol	70.36	70.02
Zm00001d054005_P006	Maize	cytosol	70.36	67.13
Zm00001d006386_P001	Maize	cytosol, plastid	40.0	56.85
Zm00001d002305_P001	Maize	mitochondrion	49.16	47.66
Zm00001d049311_P001	Maize	cytosol	24.34	44.69
Zm00001d021311_P001	Maize	plastid	22.65	40.52
Zm00001d032192_P001	Maize	extracellular, golgi	28.67	27.36
KRG99414	Soybean	cytosol	25.3	24.53
KRH45615	Soybean	cytosol	25.3	24.53
KRH74545	Soybean	endoplasmic reticulum	25.06	24.3
KRH69617	Soybean	cytosol	25.06	24.3
KRH16840	Soybean	cytosol	26.02	23.89
KRH61131	Soybean	cytosol, nucleus	24.34	22.8
KRH72454	Soybean	cytosol	21.93	22.58
KRH28283	Soybean	cytosol, golgi	23.61	22.37
KRH51806	Soybean	cytosol	20.72	22.34
KRH58201	Soybean	mitochondrion	23.13	21.92
KRH77207	Soybean	cytosol, extracellular	22.89	21.69
KRH04335	Soybean	endoplasmic reticulum	22.65	21.46

Protein Annotations

EntrezGene:100782926	Gene3D:2.60.40.1170	MapMan:22.1.5.3	Gene3D:3.30.450.60	EMBL:ACUP02006555	InterPro:AP2_Mu_C_sf
InterPro:Clathrin_mu	EnsemblPlantsGene:GLYMA_10G145500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030131	InterPro:IPR028565	UniProt:K7LJF6	EnsemblPlants:KRH33789	ProteinID:KRH33789	ProteinID:KRH33789.1
InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314	PFscan:PS51072
PANTHER:PTHR43967	PANTHER:PTHR43967:SF2	SUPFAM:SSF49447	SUPFAM:SSF64356	UniParc:UPI000233C7D8	:

Description

hypothetical protein

Coordinates

chr10:+:38030034..38032789

Molecular Weight (calculated)

46389.2 Da

IEP (calculated)

5.716

GRAVY (calculated)

0.048

Length

415 amino acids

Sequence
(BLAST)

001: MLQCIFLVSD AGEVMLEKQL TGHRVDRSIC AWFWEQAISL GDSFKQQPVI ASPTHYIFQV FRDGITFLGC TQVEMPPLMA IEFLCRVANV LNDYFGALNE
101: DIIKDNFVIV YELLDEMIDN GFPLTTEPSI LREMITPPNM VDKALSIVTG SSSNVSDTLP GAAASCVPWR TAEPKYSNNE VYVDLVEEMD AIINRDGGLV
201: KCEIYGEVQV NSRISGFPDL TLSFTNPSIL NDVRFHPCVR FRPWESHQIL SFVPPDGQFK LMSYRVRKLK STPIYVKPQL TSDGGICRVS VLAGIRNDPG
301: KTIDSVTVQF QLPPFILSAD LTSNHGTVNI LAKQTCIWSI GRIPKDKTPS LSGTLVIETG LERLHVFPTF QVGFRIMGVA LSGLQIDKLD LKTVPYRFYK
401: GFRALTRAGE FEVRS

Best Arabidopsis Sequence Match ( AT1G56590.1 )
(BLAST)

001: MLQCIFLISD SGEVMLEKQL TGHRVDRSIC AWFWDQYISQ GDSFKALPVI ASPTHYLFQI VRDGITFLAC SQVEMPPLMA IEFLCRVADV LSEYLGGLNE
101: DLIKDNFIIV YELLDEMIDN GFPLTTEPSI LKEMIAPPNL VSKMLSVVTG NASNVSDTLP SGAGSCVPWR PTDPKYSSNE VYVDLVEEMD AIVNRDGELV
201: KCEIYGEVQM NSQLTGFPDL TLSFANPSIL EDMRFHPCVR YRPWESHQVL SFVPPDGEFK LMSYRVKKLK NTPVYVKPQI TSDSGTCRIS VLVGIRSDPG
301: KTIESITLSF QLPHCVSSAD LSSNHGTVTI LSNKTCTWTI GRIPKDKTPC LSGTLALEPG LERLHVFPTF KLGFKIMGIA LSGLRIEKLD LQTIPPRLYK
401: GFRAQTRAGE FDVRL

Arabidopsis Description

AP3MAP-3 complex subunit mu [Source:UniProtKB/Swiss-Prot;Acc:F4I562]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.