CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58201	Soybean	mitochondrion	99.09	99.09
KRH77207	Soybean	cytosol, extracellular	95.89	95.89
VIT_02s0012g00910.t01	Wine grape	cytosol, extracellular	94.75	94.75
GSMUA_Achr4P28880_001	Banana	cytosol	94.52	94.52
Solyc08g006960.2.1	Tomato	cytosol, extracellular	94.52	94.52
PGSC0003DMT400052825	Potato	cytosol, extracellular	94.29	94.29
EES07425	Sorghum	cytosol, extracellular	94.06	94.06
Os02t0690700-01	Rice	plasma membrane	93.84	93.84
KRH28283	Soybean	cytosol, golgi	93.84	93.84
CDY03204	Canola	cytosol	93.61	93.61
Bra017537.1-P	Field mustard	cytosol	93.61	93.61
Bra025009.1-P	Field mustard	cytosol	93.61	93.61
CDY63050	Canola	cytosol	93.61	93.61
CDY35171	Canola	cytosol	93.61	93.61
CDX87692	Canola	cytosol	93.38	93.38
TraesCS6D01G251100.1	Wheat	extracellular	93.15	93.15
TraesCS6A01G263800.1	Wheat	extracellular	93.15	93.15
Bra022052.1-P	Field mustard	cytosol	93.15	93.15
TraesCS6B01G290800.1	Wheat	golgi	92.92	92.92
CDX77680	Canola	cytosol	92.69	92.69
CDY67244	Canola	cytosol	55.71	92.08
Solyc06g061150.2.1	Tomato	nucleus	92.24	92.03
AT5G46630.2	Thale cress	cytosol	89.27	88.66
HORVU6Hr1G066890.2	Barley	mitochondrion	92.24	85.59
Zm00001d017675_P003	Maize	cytosol, endoplasmic reticulum	89.5	75.1
GSMUA_Achr2P12100_001	Banana	cytosol	95.21	70.08
KRH74545	Soybean	endoplasmic reticulum	40.87	41.82
KRH69617	Soybean	cytosol	40.64	41.59
KRH45615	Soybean	cytosol	40.18	41.12
KRG99414	Soybean	cytosol	40.18	41.12
KRH72454	Soybean	cytosol	25.8	28.04
KRH16840	Soybean	cytosol	28.77	27.88
KRH61131	Soybean	cytosol, nucleus	27.4	27.09
KRH51806	Soybean	cytosol	23.74	27.01
KRH33789	Soybean	cytosol	21.46	22.65
KRG96704	Soybean	cytosol	21.23	22.41
KRH68423	Soybean	cytosol	21.0	21.05

Protein Annotations

EntrezGene:100800916	Gene3D:2.60.40.1170	MapMan:22.1.3.3	Gene3D:3.30.450.60	EMBL:ACUP02010400	InterPro:AP2_Mu_C_sf
InterPro:Clathrin_mu	InterPro:Clathrin_mu_CS	EnsemblPlantsGene:GLYMA_17G155100	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030131	UniProt:I1MVE9	InterPro:IPR028565	EnsemblPlants:KRH04335	ProteinID:KRH04335
ProteinID:KRH04335.1	InterPro:Longin-like_dom_sf	InterPro:MHD	PFAM:PF00928	PIRSF:PIRSF005992	PRINTS:PR00314
ScanProsite:PS00990	PFscan:PS51072	PANTHER:PTHR10529	PANTHER:PTHR10529:SF278	SUPFAM:SSF49447	SUPFAM:SSF64356
UniParc:UPI000233EC3E	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:13094292..13100634

Molecular Weight (calculated)

49295.2 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.028

Length

438 amino acids

Sequence
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RLYRDDVGGN MVDAFRTHVM QTKELGTCPV RQIGGCSFFY MRISNVYIVI VVSNNANVAC AFKFVVEAVA LFRSYFGGVF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP TDRPVPNATL QVTGAVGWRR EGLVYKKNEV FLDIVESVNL LMSSKGSVLR
201: CDVTGKILMK CFLSGMPDLK LGLNDKIGLE KEAQLKSRPA KSGKSIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFKVLPTIKE
301: LGRSRIEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF TVTSGRAKYN ASIDCLVWKI RKFPGQTEST LSAEVELIST TTEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Best Arabidopsis Sequence Match ( AT5G46630.1 )
(BLAST)

001: MPVAASAIYF LNLRGDVLIN RTYRDDVGGN MVDAFRTHIM QTKELGNCPV RQIGGCSFVY MRISNVYIVI VVSSNANVAC GFKFVVEAVA LFKSYFGGAF
101: DEDAIRNNFV LIYELLDEIM DFGYPQNLSP EILKLYITQE GVRSPFSSKP KDKPVPNATL QVTGAVGWRR EGLAYKKNEV FLDIVESVNL LMSSKGNVLR
201: CDVTGKVLMK CFLSGMPDLK LGLNDKIGLE KESEMKSRPA KSGKTIELDD VTFHQCVNLT RFNSEKTVSF VPPDGEFELM KYRITEGVNL PFRVLPTIKE
301: LGRTRMEVNV KVKSVFGAKM FALGVVVKIP VPKQTAKTNF QVTTGRAKYN PSIDCLVWKI RKFPGQTEST LSAEIELIST MGEKKSWTRP PIQMEFQVPM
401: FTASGLRVRF LKVWEKSGYN TVEWVRYITK AGSYEIRC

Arabidopsis Description

Clathrin adaptor complexes medium subunit family protein [Source:UniProtKB/TrEMBL;Acc:F4KHJ7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.